Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
LIG3P49916 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
LIG3P49916 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC6.27□□□□□ -1.41
LIG3P49916 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC6.27□□□□□ -1.41
LIG3P49916 RNU6-251P-201ENST00000363235 104 ntBASIC6.27□□□□□ -1.41
LIG3P49916 SNORD1C-201ENST00000363315 78 ntBASIC6.27□□□□□ -1.41
LIG3P49916 Y_RNA.296-201ENST00000364930 108 ntBASIC6.27□□□□□ -1.41
LIG3P49916 S100A5-201ENST00000368717 506 ntAPPRIS P1 TSL 3 BASIC6.27□□□□□ -1.41
LIG3P49916 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC6.27□□□□□ -1.41
LIG3P49916 FCF1P10-201ENST00000407590 479 ntBASIC6.27□□□□□ -1.41
LIG3P49916 VN1R8P-201ENST00000407739 893 ntBASIC6.27□□□□□ -1.41
LIG3P49916 RN7SKP144-201ENST00000411108 279 ntBASIC6.27□□□□□ -1.41
LIG3P49916 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC6.27□□□□□ -1.41
LIG3P49916 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC6.27□□□□□ -1.41
LIG3P49916 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC6.27□□□□□ -1.41
LIG3P49916 AC007679.3-201ENST00000434035 414 ntBASIC6.27□□□□□ -1.41
LIG3P49916 AC099670.2-201ENST00000435130 321 ntBASIC6.27□□□□□ -1.41
LIG3P49916 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC6.27□□□□□ -1.41
LIG3P49916 AL138899.2-201ENST00000439139 499 ntBASIC6.27□□□□□ -1.41
LIG3P49916 RPL5P25-201ENST00000441148 775 ntBASIC6.27□□□□□ -1.41
LIG3P49916 SNRPEP8-201ENST00000442866 260 ntBASIC6.27□□□□□ -1.41
LIG3P49916 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC6.27□□□□□ -1.41
LIG3P49916 UBE2V1P7-201ENST00000446395 340 ntBASIC6.27□□□□□ -1.41
LIG3P49916 AL035551.1-201ENST00000446931 348 ntBASIC6.27□□□□□ -1.41
LIG3P49916 RPL39P6-201ENST00000448289 150 ntBASIC6.27□□□□□ -1.41
LIG3P49916 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC6.27□□□□□ -1.41
LIG3P49916 HIGD1AP16-201ENST00000450986 258 ntBASIC6.27□□□□□ -1.41
LIG3P49916 TRGVB-201ENST00000453257 471 ntBASIC6.27□□□□□ -1.41
LIG3P49916 HMGB1P4-201ENST00000455362 567 ntBASIC6.27□□□□□ -1.41
LIG3P49916 RPL37P3-201ENST00000456825 293 ntBASIC6.27□□□□□ -1.41
LIG3P49916 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC6.27□□□□□ -1.41
LIG3P49916 HMGB1P36-201ENST00000487709 576 ntBASIC6.27□□□□□ -1.41
LIG3P49916 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC6.27□□□□□ -1.41
LIG3P49916 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC6.27□□□□□ -1.41
LIG3P49916 AC105919.1-201ENST00000507203 393 ntTSL 3 BASIC6.27□□□□□ -1.41
LIG3P49916 ARL2BPP6-201ENST00000512757 439 ntBASIC6.27□□□□□ -1.41
LIG3P49916 AC027343.2-201ENST00000513219 343 ntTSL 3 BASIC6.27□□□□□ -1.41
LIG3P49916 AC108064.1-201ENST00000513791 460 ntBASIC6.27□□□□□ -1.41
LIG3P49916 RNU6-150P-201ENST00000516237 95 ntBASIC6.27□□□□□ -1.41
LIG3P49916 SNORA18.6-201ENST00000516792 115 ntBASIC6.27□□□□□ -1.41
LIG3P49916 MTCO2P4-201ENST00000517968 247 ntBASIC6.27□□□□□ -1.41
LIG3P49916 IGLVIV-64-201ENST00000518581 301 ntBASIC6.27□□□□□ -1.41
LIG3P49916 ARL2BPP5-201ENST00000523141 481 ntBASIC6.27□□□□□ -1.41
LIG3P49916 AP001646.1-201ENST00000527936 915 ntBASIC6.27□□□□□ -1.41
LIG3P49916 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC6.27□□□□□ -1.41
LIG3P49916 AP004247.1-201ENST00000531556 1289 ntBASIC6.27□□□□□ -1.41
LIG3P49916 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC6.27□□□□□ -1.41
LIG3P49916 A2MP1-201ENST00000543404 1201 ntTSL 5 BASIC6.27□□□□□ -1.41
LIG3P49916 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC6.27□□□□□ -1.41
LIG3P49916 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC6.27□□□□□ -1.41
LIG3P49916 AC010325.1-202ENST00000562076 279 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
LIG3P49916 MRPS21P8-201ENST00000569196 235 ntBASIC6.27□□□□□ -1.41
LIG3P49916 AC002310.3-201ENST00000569728 723 ntBASIC6.27□□□□□ -1.41
LIG3P49916 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC6.27□□□□□ -1.41
LIG3P49916 AC018761.4-201ENST00000585742 272 ntTSL 3 BASIC6.27□□□□□ -1.41
LIG3P49916 AC112191.3-201ENST00000604371 277 ntBASIC6.27□□□□□ -1.41
LIG3P49916 AL499605.1-201ENST00000604628 403 ntBASIC6.27□□□□□ -1.41
LIG3P49916 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC6.27□□□□□ -1.41
LIG3P49916 AC006338.1-201ENST00000618453 749 ntBASIC6.27□□□□□ -1.41
LIG3P49916 PACRG-211ENST00000621363 360 ntTSL 5 BASIC6.27□□□□□ -1.41
LIG3P49916 MVP-219ENST00000629059 120 ntTSL 5 BASIC6.27□□□□□ -1.41
LIG3P49916 FAM157B-203ENST00000639350 358 ntBASIC6.27□□□□□ -1.41
LIG3P49916 AC116667.2-201ENST00000641075 823 ntBASIC6.27□□□□□ -1.41
LIG3P49916 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
LIG3P49916 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
LIG3P49916 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC6.27□□□□□ -1.41
LIG3P49916 AC022031.1-201ENST00000585985 2593 ntBASIC6.27□□□□□ -1.41
LIG3P49916 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC6.27□□□□□ -1.41
LIG3P49916 CASC19-204ENST00000641001 2055 ntBASIC6.27□□□□□ -1.41
LIG3P49916 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
LIG3P49916 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC6.27□□□□□ -1.41
LIG3P49916 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
LIG3P49916 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC6.26□□□□□ -1.41
LIG3P49916 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
LIG3P49916 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
LIG3P49916 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
LIG3P49916 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC6.26□□□□□ -1.41
LIG3P49916 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC6.26□□□□□ -1.41
LIG3P49916 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
LIG3P49916 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
LIG3P49916 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
LIG3P49916 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC6.26□□□□□ -1.41
LIG3P49916 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
LIG3P49916 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC6.26□□□□□ -1.41
LIG3P49916 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
LIG3P49916 AL390316.1-201ENST00000406279 553 ntBASIC6.26□□□□□ -1.41
LIG3P49916 RNU2-28P-201ENST00000410457 189 ntBASIC6.26□□□□□ -1.41
LIG3P49916 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC6.26□□□□□ -1.41
LIG3P49916 AC048351.1-201ENST00000420064 602 ntBASIC6.26□□□□□ -1.41
LIG3P49916 MTCYBP24-201ENST00000420387 1106 ntBASIC6.26□□□□□ -1.41
LIG3P49916 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC6.26□□□□□ -1.41
LIG3P49916 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC6.26□□□□□ -1.41
LIG3P49916 MTCO3P21-201ENST00000430791 643 ntBASIC6.26□□□□□ -1.41
LIG3P49916 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC6.26□□□□□ -1.41
LIG3P49916 PSMD10P2-201ENST00000432890 672 ntBASIC6.26□□□□□ -1.41
LIG3P49916 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
LIG3P49916 RPS26P40-201ENST00000435209 294 ntBASIC6.26□□□□□ -1.41
LIG3P49916 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC6.26□□□□□ -1.41
LIG3P49916 PCNPP2-201ENST00000441651 455 ntBASIC6.26□□□□□ -1.41
LIG3P49916 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC6.26□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 81.4 ms