Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
USH2AO75445 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC1.74□□□□□ -2.13
USH2AO75445 TCF4-278ENST00000636400 8343 ntTSL 5 BASIC1.74□□□□□ -2.13
USH2AO75445 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC1.74□□□□□ -2.13
USH2AO75445 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC1.74□□□□□ -2.13
USH2AO75445 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC1.73□□□□□ -2.13
USH2AO75445 CKS1BP6-201ENST00000424932 240 ntBASIC1.73□□□□□ -2.13
USH2AO75445 RPL21P110-201ENST00000433345 446 ntBASIC1.73□□□□□ -2.13
USH2AO75445 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC1.73□□□□□ -2.13
USH2AO75445 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC1.73□□□□□ -2.13
USH2AO75445 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC1.73□□□□□ -2.13
USH2AO75445 AC068196.1-201ENST00000456895 833 ntTSL 3 BASIC1.73□□□□□ -2.13
USH2AO75445 RPL7P1-201ENST00000468161 747 ntBASIC1.73□□□□□ -2.13
USH2AO75445 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC1.73□□□□□ -2.13
USH2AO75445 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC1.73□□□□□ -2.13
USH2AO75445 STX3-204ENST00000530221 534 ntTSL 5 BASIC1.73□□□□□ -2.13
USH2AO75445 AC011611.1-201ENST00000552179 197 ntBASIC1.73□□□□□ -2.13
USH2AO75445 ATP5A1P2-202ENST00000616464 443 ntBASIC1.73□□□□□ -2.13
USH2AO75445 AL512643.1-201ENST00000635735 524 ntBASIC1.73□□□□□ -2.13
USH2AO75445 AC244258.1-201ENST00000637553 1071 ntBASIC1.73□□□□□ -2.13
USH2AO75445 DCX-203ENST00000371993 9231 ntAPPRIS ALT1 TSL 5 BASIC1.73□□□□□ -2.13
USH2AO75445 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC1.73□□□□□ -2.13
USH2AO75445 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC1.73□□□□□ -2.13
USH2AO75445 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
USH2AO75445 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC1.73□□□□□ -2.13
USH2AO75445 ZNF716-201ENST00000420713 5197 ntAPPRIS P1 TSL 4 BASIC1.73□□□□□ -2.13
USH2AO75445 OTUD4P1-201ENST00000237841 3067 ntBASIC1.73□□□□□ -2.13
USH2AO75445 CNKSR3-205ENST00000607772 21063 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
USH2AO75445 CDY11P-201ENST00000447168 1651 ntBASIC1.73□□□□□ -2.13
USH2AO75445 SV2C-202ENST00000502798 11035 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
USH2AO75445 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
USH2AO75445 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC1.73□□□□□ -2.13
USH2AO75445 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC1.73□□□□□ -2.13
USH2AO75445 HIGD1AP4-201ENST00000430194 280 ntBASIC1.73□□□□□ -2.13
USH2AO75445 MAPRE1P3-201ENST00000435438 796 ntBASIC1.73□□□□□ -2.13
USH2AO75445 AL513124.1-201ENST00000450410 614 ntBASIC1.73□□□□□ -2.13
USH2AO75445 AC108938.1-201ENST00000451204 136 ntBASIC1.73□□□□□ -2.13
USH2AO75445 UBL5P3-201ENST00000475112 231 ntBASIC1.73□□□□□ -2.13
USH2AO75445 RPL29P14-201ENST00000495837 428 ntBASIC1.73□□□□□ -2.13
USH2AO75445 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC1.73□□□□□ -2.13
USH2AO75445 UBE2NP1-201ENST00000545592 458 ntBASIC1.73□□□□□ -2.13
USH2AO75445 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC1.73□□□□□ -2.13
USH2AO75445 AC008655.2-201ENST00000597049 304 ntTSL 4 BASIC1.73□□□□□ -2.13
USH2AO75445 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC1.73□□□□□ -2.13
USH2AO75445 PCDH19-203ENST00000420881 7936 ntAPPRIS ALT2 TSL 1 (best) BASIC1.73□□□□□ -2.13
USH2AO75445 NOX4-211ENST00000528341 1899 ntTSL 2 BASIC1.73□□□□□ -2.13
USH2AO75445 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC1.73□□□□□ -2.13
USH2AO75445 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC1.73□□□□□ -2.13
USH2AO75445 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC1.73□□□□□ -2.13
USH2AO75445 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC1.73□□□□□ -2.13
USH2AO75445 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
USH2AO75445 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
USH2AO75445 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC1.73□□□□□ -2.13
USH2AO75445 ZFX-202ENST00000338565 2906 ntTSL 5 BASIC1.73□□□□□ -2.13
USH2AO75445 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
USH2AO75445 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC1.73□□□□□ -2.13
USH2AO75445 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
USH2AO75445 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC1.73□□□□□ -2.13
USH2AO75445 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC1.73□□□□□ -2.13
USH2AO75445 COTL1P1-201ENST00000422309 375 ntBASIC1.73□□□□□ -2.13
USH2AO75445 RANP8-201ENST00000444720 713 ntBASIC1.73□□□□□ -2.13
USH2AO75445 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
USH2AO75445 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC1.73□□□□□ -2.13
USH2AO75445 RNA5SP445-201ENST00000515889 115 ntBASIC1.73□□□□□ -2.13
USH2AO75445 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC1.73□□□□□ -2.13
USH2AO75445 AC007066.2-202ENST00000566531 914 ntBASIC1.73□□□□□ -2.13
USH2AO75445 AC087241.4-201ENST00000612441 480 ntBASIC1.73□□□□□ -2.13
USH2AO75445 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC1.73□□□□□ -2.13
USH2AO75445 MTCO1P9-201ENST00000505577 1534 ntBASIC1.73□□□□□ -2.13
USH2AO75445 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
USH2AO75445 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
USH2AO75445 TTC28-208ENST00000612946 11274 ntAPPRIS ALT2 TSL 5 BASIC1.73□□□□□ -2.13
USH2AO75445 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC1.73□□□□□ -2.13
USH2AO75445 AC097504.1-201ENST00000515103 2415 ntBASIC1.73□□□□□ -2.13
USH2AO75445 AC073073.2-201ENST00000609827 2578 ntBASIC1.73□□□□□ -2.13
USH2AO75445 EXPH5-203ENST00000525344 6542 ntAPPRIS ALT2 TSL 1 (best) BASIC1.73□□□□□ -2.13
USH2AO75445 AC009779.8-201ENST00000641684 4384 ntBASIC1.73□□□□□ -2.13
USH2AO75445 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
USH2AO75445 AC239868.2-201ENST00000564237 4527 ntBASIC1.73□□□□□ -2.13
USH2AO75445 MEF2C-244ENST00000636998 5936 ntTSL 5 BASIC1.73□□□□□ -2.13
USH2AO75445 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC1.73□□□□□ -2.13
USH2AO75445 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC1.73□□□□□ -2.13
USH2AO75445 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
USH2AO75445 ARNTL2-207ENST00000542388 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC1.73□□□□□ -2.13
USH2AO75445 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC1.73□□□□□ -2.13
USH2AO75445 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.73□□□□□ -2.13
USH2AO75445 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC1.73□□□□□ -2.13
USH2AO75445 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC1.73□□□□□ -2.13
USH2AO75445 RNA5SP97-201ENST00000365006 84 ntBASIC1.73□□□□□ -2.13
USH2AO75445 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC1.73□□□□□ -2.13
USH2AO75445 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
USH2AO75445 SNORA3.3-201ENST00000408712 125 ntBASIC1.73□□□□□ -2.13
USH2AO75445 RN7SKP97-201ENST00000410966 333 ntBASIC1.73□□□□□ -2.13
USH2AO75445 PCNPP4-201ENST00000414817 517 ntBASIC1.73□□□□□ -2.13
USH2AO75445 EIF1P3-201ENST00000423841 334 ntBASIC1.73□□□□□ -2.13
USH2AO75445 AC245517.4-201ENST00000448601 281 ntBASIC1.73□□□□□ -2.13
USH2AO75445 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC1.73□□□□□ -2.13
USH2AO75445 AC026782.2-201ENST00000510845 636 ntBASIC1.73□□□□□ -2.13
USH2AO75445 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC1.73□□□□□ -2.13
USH2AO75445 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC1.73□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 107 ms