Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC3.94□□□□□ -1.78
SKA3Q8IX90 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC3.94□□□□□ -1.78
SKA3Q8IX90 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC3.94□□□□□ -1.78
SKA3Q8IX90 ATP5G1P3-201ENST00000463301 410 ntBASIC3.94□□□□□ -1.78
SKA3Q8IX90 RPS29P22-201ENST00000472363 168 ntBASIC3.94□□□□□ -1.78
SKA3Q8IX90 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC3.94□□□□□ -1.78
SKA3Q8IX90 AC139783.2-201ENST00000504847 1145 ntBASIC3.94□□□□□ -1.78
SKA3Q8IX90 AC018797.3-201ENST00000513388 1241 ntBASIC3.94□□□□□ -1.78
SKA3Q8IX90 AC107016.1-201ENST00000550463 337 ntBASIC3.94□□□□□ -1.78
SKA3Q8IX90 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC3.94□□□□□ -1.78
SKA3Q8IX90 LINC00557-201ENST00000563184 1279 ntBASIC3.94□□□□□ -1.78
SKA3Q8IX90 AC084783.1-201ENST00000565846 910 ntBASIC3.94□□□□□ -1.78
SKA3Q8IX90 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC3.94□□□□□ -1.78
SKA3Q8IX90 AC090181.2-201ENST00000602975 672 ntBASIC3.94□□□□□ -1.78
SKA3Q8IX90 AC090948.2-201ENST00000607363 564 ntBASIC3.94□□□□□ -1.78
SKA3Q8IX90 BX323046.1-201ENST00000610145 535 ntBASIC3.94□□□□□ -1.78
SKA3Q8IX90 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC3.94□□□□□ -1.78
SKA3Q8IX90 AC025016.1-201ENST00000616746 682 ntBASIC3.94□□□□□ -1.78
SKA3Q8IX90 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC3.94□□□□□ -1.78
SKA3Q8IX90 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC3.94□□□□□ -1.78
SKA3Q8IX90 AC119674.1-212ENST00000641155 993 ntBASIC3.94□□□□□ -1.78
SKA3Q8IX90 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC3.94□□□□□ -1.78
SKA3Q8IX90 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC3.94□□□□□ -1.78
SKA3Q8IX90 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC3.94□□□□□ -1.78
SKA3Q8IX90 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
SKA3Q8IX90 AL132640.2-201ENST00000559968 1698 ntBASIC3.94□□□□□ -1.78
SKA3Q8IX90 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
SKA3Q8IX90 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC3.93□□□□□ -1.78
SKA3Q8IX90 MFSD4BP1-201ENST00000513330 1552 ntBASIC3.93□□□□□ -1.78
SKA3Q8IX90 AL592148.3-201ENST00000608771 2646 ntBASIC3.93□□□□□ -1.78
SKA3Q8IX90 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC3.93□□□□□ -1.78
SKA3Q8IX90 SLC2A3P1-201ENST00000519666 1451 ntBASIC3.93□□□□□ -1.78
SKA3Q8IX90 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
SKA3Q8IX90 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
SKA3Q8IX90 CASC19-284ENST00000642142 1868 ntBASIC3.93□□□□□ -1.78
SKA3Q8IX90 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
SKA3Q8IX90 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC3.93□□□□□ -1.78
SKA3Q8IX90 RNU1-63P-201ENST00000383902 164 ntBASIC3.93□□□□□ -1.78
SKA3Q8IX90 MIR3074-201ENST00000384885 81 ntBASIC3.93□□□□□ -1.78
SKA3Q8IX90 MIR192-201ENST00000384915 110 ntBASIC3.93□□□□□ -1.78
SKA3Q8IX90 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
SKA3Q8IX90 RNU6-244P-201ENST00000391028 104 ntBASIC3.93□□□□□ -1.78
SKA3Q8IX90 RNA5SP332-201ENST00000391063 115 ntBASIC3.93□□□□□ -1.78
SKA3Q8IX90 RPS3AP23-201ENST00000401762 784 ntBASIC3.93□□□□□ -1.78
SKA3Q8IX90 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC3.93□□□□□ -1.78
SKA3Q8IX90 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC3.93□□□□□ -1.78
SKA3Q8IX90 AL357078.2-201ENST00000416486 427 ntBASIC3.93□□□□□ -1.78
SKA3Q8IX90 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC3.93□□□□□ -1.78
SKA3Q8IX90 RPEP3-201ENST00000425462 676 ntBASIC3.93□□□□□ -1.78
SKA3Q8IX90 RPS26P47-201ENST00000427219 348 ntBASIC3.93□□□□□ -1.78
SKA3Q8IX90 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC3.93□□□□□ -1.78
SKA3Q8IX90 RPL23AP1-201ENST00000428990 471 ntBASIC3.93□□□□□ -1.78
SKA3Q8IX90 AC006055.1-201ENST00000432423 411 ntTSL 3 BASIC3.93□□□□□ -1.78
SKA3Q8IX90 ARL4AP4-201ENST00000434170 518 ntBASIC3.93□□□□□ -1.78
SKA3Q8IX90 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC3.93□□□□□ -1.78
SKA3Q8IX90 MTCYBP12-201ENST00000440559 1134 ntBASIC3.93□□□□□ -1.78
SKA3Q8IX90 AC023512.1-201ENST00000444513 499 ntBASIC3.93□□□□□ -1.78
SKA3Q8IX90 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC3.93□□□□□ -1.78
SKA3Q8IX90 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC3.93□□□□□ -1.78
SKA3Q8IX90 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
SKA3Q8IX90 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC3.93□□□□□ -1.78
SKA3Q8IX90 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
SKA3Q8IX90 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC3.93□□□□□ -1.78
SKA3Q8IX90 RPS29P33-201ENST00000456717 146 ntBASIC3.93□□□□□ -1.78
SKA3Q8IX90 AL133477.1-201ENST00000457472 514 ntBASIC3.93□□□□□ -1.78
SKA3Q8IX90 AC092691.2-201ENST00000461787 803 ntBASIC3.93□□□□□ -1.78
SKA3Q8IX90 NFU1-207ENST00000462320 558 ntTSL 4 BASIC3.93□□□□□ -1.78
SKA3Q8IX90 AC093663.2-201ENST00000484625 313 ntBASIC3.93□□□□□ -1.78
SKA3Q8IX90 RN7SL205P-201ENST00000490174 284 ntBASIC3.93□□□□□ -1.78
SKA3Q8IX90 AC111000.3-201ENST00000508057 576 ntBASIC3.93□□□□□ -1.78
SKA3Q8IX90 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC3.93□□□□□ -1.78
SKA3Q8IX90 SETP12-201ENST00000514068 805 ntBASIC3.93□□□□□ -1.78
SKA3Q8IX90 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC3.93□□□□□ -1.78
SKA3Q8IX90 AP000827.1-201ENST00000527814 258 ntBASIC3.93□□□□□ -1.78
SKA3Q8IX90 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC3.93□□□□□ -1.78
SKA3Q8IX90 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC3.93□□□□□ -1.78
SKA3Q8IX90 AC021483.2-201ENST00000567415 758 ntBASIC3.93□□□□□ -1.78
SKA3Q8IX90 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC3.93□□□□□ -1.78
SKA3Q8IX90 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC3.93□□□□□ -1.78
SKA3Q8IX90 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC3.93□□□□□ -1.78
SKA3Q8IX90 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC3.93□□□□□ -1.78
SKA3Q8IX90 AC008782.1-201ENST00000603386 430 ntBASIC3.93□□□□□ -1.78
SKA3Q8IX90 AC093765.1-201ENST00000603758 881 ntBASIC3.93□□□□□ -1.78
SKA3Q8IX90 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC3.93□□□□□ -1.78
SKA3Q8IX90 AC012557.1-201ENST00000607115 611 ntBASIC3.93□□□□□ -1.78
SKA3Q8IX90 RN7SL722P-201ENST00000617780 284 ntBASIC3.93□□□□□ -1.78
SKA3Q8IX90 RN7SL565P-201ENST00000618246 284 ntBASIC3.93□□□□□ -1.78
SKA3Q8IX90 AP005019.3-201ENST00000620418 560 ntBASIC3.93□□□□□ -1.78
SKA3Q8IX90 AC073592.7-201ENST00000623659 507 ntBASIC3.93□□□□□ -1.78
SKA3Q8IX90 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC3.93□□□□□ -1.78
SKA3Q8IX90 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC3.93□□□□□ -1.78
SKA3Q8IX90 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
SKA3Q8IX90 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
SKA3Q8IX90 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC3.93□□□□□ -1.78
SKA3Q8IX90 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
SKA3Q8IX90 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
SKA3Q8IX90 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC3.93□□□□□ -1.78
SKA3Q8IX90 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
SKA3Q8IX90 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
SKA3Q8IX90 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms