Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AK5-208ENST00000478255 556 ntTSL 2 BASIC4.32□□□□□ -1.72
COL4A4P53420 RPL29P14-201ENST00000495837 428 ntBASIC4.32□□□□□ -1.72
COL4A4P53420 AC104619.4-201ENST00000510773 249 ntBASIC4.32□□□□□ -1.72
COL4A4P53420 AC026782.2-201ENST00000510845 636 ntBASIC4.32□□□□□ -1.72
COL4A4P53420 RNU1-95P-201ENST00000516357 160 ntBASIC4.32□□□□□ -1.72
COL4A4P53420 RNU1-128P-201ENST00000516704 160 ntBASIC4.32□□□□□ -1.72
COL4A4P53420 PTS-202ENST00000524931 696 ntTSL 3 BASIC4.32□□□□□ -1.72
COL4A4P53420 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC4.32□□□□□ -1.72
COL4A4P53420 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC4.32□□□□□ -1.72
COL4A4P53420 KC877982.1-201ENST00000602313 470 ntBASIC4.32□□□□□ -1.72
COL4A4P53420 MIR432-201ENST00000606207 94 ntBASIC4.32□□□□□ -1.72
COL4A4P53420 PCNP-208ENST00000627393 136 ntTSL 2 BASIC4.32□□□□□ -1.72
COL4A4P53420 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL4A4P53420 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
COL4A4P53420 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
COL4A4P53420 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL4A4P53420 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL4A4P53420 Z95327.2-201ENST00000414579 1873 ntBASIC4.31□□□□□ -1.72
COL4A4P53420 RNA5SP97-201ENST00000365006 84 ntBASIC4.31□□□□□ -1.72
COL4A4P53420 RNU2-65P-201ENST00000410162 185 ntBASIC4.31□□□□□ -1.72
COL4A4P53420 AL451050.1-201ENST00000450126 415 ntBASIC4.31□□□□□ -1.72
COL4A4P53420 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC4.31□□□□□ -1.72
COL4A4P53420 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC4.31□□□□□ -1.72
COL4A4P53420 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC4.31□□□□□ -1.72
COL4A4P53420 CDH12P2-201ENST00000504393 298 ntBASIC4.31□□□□□ -1.72
COL4A4P53420 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
COL4A4P53420 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC4.31□□□□□ -1.72
COL4A4P53420 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC4.31□□□□□ -1.72
COL4A4P53420 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
COL4A4P53420 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC4.31□□□□□ -1.72
COL4A4P53420 AC107308.1-201ENST00000615897 301 ntBASIC4.31□□□□□ -1.72
COL4A4P53420 AP005264.7-201ENST00000625003 745 ntBASIC4.31□□□□□ -1.72
COL4A4P53420 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL4A4P53420 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL4A4P53420 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
COL4A4P53420 AL138820.1-201ENST00000617901 5305 ntBASIC4.3□□□□□ -1.72
COL4A4P53420 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
COL4A4P53420 USP8P1-201ENST00000494673 3183 ntBASIC4.3□□□□□ -1.72
COL4A4P53420 AC074029.4-201ENST00000624796 1859 ntBASIC4.3□□□□□ -1.72
COL4A4P53420 AL161631.1-201ENST00000417933 486 ntBASIC4.3□□□□□ -1.72
COL4A4P53420 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC4.3□□□□□ -1.72
COL4A4P53420 PPIAP15-201ENST00000479662 484 ntBASIC4.3□□□□□ -1.72
COL4A4P53420 RPL7P24-201ENST00000493052 752 ntBASIC4.3□□□□□ -1.72
COL4A4P53420 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC4.3□□□□□ -1.72
COL4A4P53420 SCARNA14-201ENST00000516903 136 ntBASIC4.3□□□□□ -1.72
COL4A4P53420 TBCA-203ENST00000517679 545 ntTSL 3 BASIC4.3□□□□□ -1.72
COL4A4P53420 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.3□□□□□ -1.72
COL4A4P53420 MTND1P6-201ENST00000523621 946 ntBASIC4.3□□□□□ -1.72
COL4A4P53420 SULT6B1-205ENST00000535679 1027 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
COL4A4P53420 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC4.3□□□□□ -1.72
COL4A4P53420 AF001550.2-201ENST00000636643 217 ntBASIC4.3□□□□□ -1.72
COL4A4P53420 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC4.3□□□□□ -1.72
COL4A4P53420 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
COL4A4P53420 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC4.3□□□□□ -1.72
COL4A4P53420 INTS6-203ENST00000442263 15428 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
COL4A4P53420 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC4.3□□□□□ -1.72
COL4A4P53420 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.3□□□□□ -1.72
COL4A4P53420 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
COL4A4P53420 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
COL4A4P53420 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
COL4A4P53420 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
COL4A4P53420 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
COL4A4P53420 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC4.29□□□□□ -1.72
COL4A4P53420 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC4.29□□□□□ -1.72
COL4A4P53420 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC4.29□□□□□ -1.72
COL4A4P53420 RPS3AP6-201ENST00000484430 795 ntBASIC4.29□□□□□ -1.72
COL4A4P53420 TCP11X3P-202ENST00000514289 1254 ntBASIC4.29□□□□□ -1.72
COL4A4P53420 RNA5SP179-201ENST00000517284 121 ntBASIC4.29□□□□□ -1.72
COL4A4P53420 CASP1-216ENST00000534497 825 ntTSL 5 BASIC4.29□□□□□ -1.72
COL4A4P53420 DUX4L52-201ENST00000549363 777 ntBASIC4.29□□□□□ -1.72
COL4A4P53420 AC022968.1-201ENST00000567372 442 ntBASIC4.29□□□□□ -1.72
COL4A4P53420 AC233702.9-201ENST00000581528 203 ntBASIC4.29□□□□□ -1.72
COL4A4P53420 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC4.29□□□□□ -1.72
COL4A4P53420 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC4.29□□□□□ -1.72
COL4A4P53420 MIR6868-201ENST00000611215 58 ntBASIC4.29□□□□□ -1.72
COL4A4P53420 AC243654.2-201ENST00000612843 443 ntBASIC4.29□□□□□ -1.72
COL4A4P53420 AC005344.1-201ENST00000613391 459 ntBASIC4.29□□□□□ -1.72
COL4A4P53420 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL4A4P53420 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL4A4P53420 AC006971.1-201ENST00000407916 4486 ntBASIC4.29□□□□□ -1.72
COL4A4P53420 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC4.29□□□□□ -1.72
COL4A4P53420 MTND5P1-201ENST00000445440 1375 ntBASIC4.29□□□□□ -1.72
COL4A4P53420 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL4A4P53420 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
COL4A4P53420 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL4A4P53420 LIN7C-202ENST00000524596 4290 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
COL4A4P53420 CACNA1E-210ENST00000621791 16171 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL4A4P53420 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL4A4P53420 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL4A4P53420 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
COL4A4P53420 RNU6-1279P-201ENST00000383917 103 ntBASIC4.29□□□□□ -1.72
COL4A4P53420 HIST1H2APS3-201ENST00000403259 134 ntBASIC4.29□□□□□ -1.72
COL4A4P53420 RN7SKP199-201ENST00000410325 305 ntBASIC4.29□□□□□ -1.72
COL4A4P53420 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC4.29□□□□□ -1.72
COL4A4P53420 HLA-N-201ENST00000437516 135 ntBASIC4.29□□□□□ -1.72
COL4A4P53420 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC4.29□□□□□ -1.72
COL4A4P53420 SEPT14P1-201ENST00000458703 648 ntBASIC4.29□□□□□ -1.72
COL4A4P53420 AL358832.1-201ENST00000497800 389 ntBASIC4.29□□□□□ -1.72
COL4A4P53420 HSPD1P15-201ENST00000505573 1122 ntBASIC4.29□□□□□ -1.72
COL4A4P53420 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 91.2 ms