Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC4.85□□□□□ -1.63
SCN4AP35499 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC4.85□□□□□ -1.63
SCN4AP35499 ZNF962P-201ENST00000443465 3140 ntBASIC4.85□□□□□ -1.63
SCN4AP35499 HIST1H2APS3-201ENST00000403259 134 ntBASIC4.85□□□□□ -1.63
SCN4AP35499 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC4.85□□□□□ -1.63
SCN4AP35499 HSPD1P21-201ENST00000436541 245 ntBASIC4.85□□□□□ -1.63
SCN4AP35499 RN7SKP13-201ENST00000515933 244 ntBASIC4.85□□□□□ -1.63
SCN4AP35499 RNU1-103P-201ENST00000516502 125 ntBASIC4.85□□□□□ -1.63
SCN4AP35499 RNA5SP179-201ENST00000517284 121 ntBASIC4.85□□□□□ -1.63
SCN4AP35499 CASP1-216ENST00000534497 825 ntTSL 5 BASIC4.85□□□□□ -1.63
SCN4AP35499 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
SCN4AP35499 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
SCN4AP35499 NAMPTP1-201ENST00000440465 2514 ntBASIC4.85□□□□□ -1.63
SCN4AP35499 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.85□□□□□ -1.63
SCN4AP35499 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
SCN4AP35499 C4orf33-202ENST00000425929 1588 ntAPPRIS P1 TSL 2 BASIC4.85□□□□□ -1.63
SCN4AP35499 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
SCN4AP35499 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SCN4AP35499 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC4.84□□□□□ -1.63
SCN4AP35499 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
SCN4AP35499 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC4.84□□□□□ -1.63
SCN4AP35499 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.84□□□□□ -1.63
SCN4AP35499 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SCN4AP35499 HMGB3P19-201ENST00000403971 560 ntBASIC4.84□□□□□ -1.63
SCN4AP35499 EIF4EP1-201ENST00000422311 642 ntBASIC4.84□□□□□ -1.63
SCN4AP35499 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC4.84□□□□□ -1.63
SCN4AP35499 RPL23AP25-201ENST00000430973 463 ntBASIC4.84□□□□□ -1.63
SCN4AP35499 OR6C71P-201ENST00000432580 913 ntBASIC4.84□□□□□ -1.63
SCN4AP35499 RPL29P14-201ENST00000495837 428 ntBASIC4.84□□□□□ -1.63
SCN4AP35499 AC098799.1-201ENST00000504752 800 ntBASIC4.84□□□□□ -1.63
SCN4AP35499 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
SCN4AP35499 RN7SKP18-201ENST00000516005 275 ntBASIC4.84□□□□□ -1.63
SCN4AP35499 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC4.84□□□□□ -1.63
SCN4AP35499 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
SCN4AP35499 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC4.84□□□□□ -1.63
SCN4AP35499 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SCN4AP35499 PUS10-201ENST00000316752 2278 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
SCN4AP35499 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
SCN4AP35499 PRO1804-201ENST00000623780 2050 ntBASIC4.84□□□□□ -1.63
SCN4AP35499 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
SCN4AP35499 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.64
SCN4AP35499 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC4.84□□□□□ -1.64
SCN4AP35499 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
SCN4AP35499 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
SCN4AP35499 RNA5SP399-201ENST00000364003 117 ntBASIC4.83□□□□□ -1.64
SCN4AP35499 MIR1911-201ENST00000410783 80 ntBASIC4.83□□□□□ -1.64
SCN4AP35499 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC4.83□□□□□ -1.64
SCN4AP35499 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC4.83□□□□□ -1.64
SCN4AP35499 AC104619.4-201ENST00000510773 249 ntBASIC4.83□□□□□ -1.64
SCN4AP35499 KRT19P6-201ENST00000510983 209 ntBASIC4.83□□□□□ -1.64
SCN4AP35499 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SCN4AP35499 AC007066.2-202ENST00000566531 914 ntBASIC4.83□□□□□ -1.64
SCN4AP35499 EIF4A2P1-201ENST00000587313 1063 ntBASIC4.83□□□□□ -1.64
SCN4AP35499 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC4.83□□□□□ -1.64
SCN4AP35499 COX6CP4-201ENST00000605798 228 ntBASIC4.83□□□□□ -1.64
SCN4AP35499 OR7M1P-201ENST00000608946 533 ntBASIC4.83□□□□□ -1.64
SCN4AP35499 MIR6868-201ENST00000611215 58 ntBASIC4.83□□□□□ -1.64
SCN4AP35499 AL645927.2-201ENST00000618350 349 ntBASIC4.83□□□□□ -1.64
SCN4AP35499 AF001550.2-201ENST00000636643 217 ntBASIC4.83□□□□□ -1.64
SCN4AP35499 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
SCN4AP35499 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC4.83□□□□□ -1.64
SCN4AP35499 SRSF11-202ENST00000370950 3784 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
SCN4AP35499 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC4.83□□□□□ -1.64
SCN4AP35499 AP004289.2-201ENST00000444413 1457 ntBASIC4.83□□□□□ -1.64
SCN4AP35499 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
SCN4AP35499 RNA5SP267-201ENST00000364893 126 ntBASIC4.83□□□□□ -1.64
SCN4AP35499 AC004448.2-201ENST00000422360 586 ntBASIC4.83□□□□□ -1.64
SCN4AP35499 DYNLL1P7-201ENST00000429273 258 ntBASIC4.83□□□□□ -1.64
SCN4AP35499 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC4.83□□□□□ -1.64
SCN4AP35499 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC4.83□□□□□ -1.64
SCN4AP35499 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC4.83□□□□□ -1.64
SCN4AP35499 RPL6P9-201ENST00000466502 859 ntBASIC4.83□□□□□ -1.64
SCN4AP35499 AC093853.1-201ENST00000515689 483 ntBASIC4.83□□□□□ -1.64
SCN4AP35499 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC4.83□□□□□ -1.64
SCN4AP35499 MIR3124-201ENST00000582636 67 ntBASIC4.83□□□□□ -1.64
SCN4AP35499 AC114878.2-201ENST00000604863 1251 ntBASIC4.83□□□□□ -1.64
SCN4AP35499 AC092354.2-201ENST00000607786 514 ntBASIC4.83□□□□□ -1.64
SCN4AP35499 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.83□□□□□ -1.64
SCN4AP35499 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.83□□□□□ -1.64
SCN4AP35499 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
SCN4AP35499 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SCN4AP35499 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.82□□□□□ -1.64
SCN4AP35499 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC4.82□□□□□ -1.64
SCN4AP35499 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
SCN4AP35499 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
SCN4AP35499 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
SCN4AP35499 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.82□□□□□ -1.64
SCN4AP35499 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC4.82□□□□□ -1.64
SCN4AP35499 RPL5P30-201ENST00000465511 891 ntBASIC4.82□□□□□ -1.64
SCN4AP35499 SCARNA14-201ENST00000516903 136 ntBASIC4.82□□□□□ -1.64
SCN4AP35499 DEFB109D-201ENST00000529497 240 ntBASIC4.82□□□□□ -1.64
SCN4AP35499 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC4.82□□□□□ -1.64
SCN4AP35499 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC4.82□□□□□ -1.64
SCN4AP35499 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC4.82□□□□□ -1.64
SCN4AP35499 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SCN4AP35499 MIR432-201ENST00000606207 94 ntBASIC4.82□□□□□ -1.64
SCN4AP35499 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC4.82□□□□□ -1.64
SCN4AP35499 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SCN4AP35499 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
SCN4AP35499 ZNF833P-201ENST00000424938 1494 ntBASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 80.1 ms