Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC4.5□□□□□ -1.69
VPS39Q96JC1 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC4.5□□□□□ -1.69
VPS39Q96JC1 RPL37P3-201ENST00000456825 293 ntBASIC4.5□□□□□ -1.69
VPS39Q96JC1 RPL7AP28-201ENST00000464513 571 ntBASIC4.5□□□□□ -1.69
VPS39Q96JC1 UBTFL6-201ENST00000477929 1024 ntBASIC4.5□□□□□ -1.69
VPS39Q96JC1 AP000926.1-201ENST00000479573 241 ntBASIC4.5□□□□□ -1.69
VPS39Q96JC1 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC4.5□□□□□ -1.69
VPS39Q96JC1 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC4.5□□□□□ -1.69
VPS39Q96JC1 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC4.5□□□□□ -1.69
VPS39Q96JC1 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
VPS39Q96JC1 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC4.5□□□□□ -1.69
VPS39Q96JC1 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC4.5□□□□□ -1.69
VPS39Q96JC1 HMGB1P46-201ENST00000520062 610 ntBASIC4.5□□□□□ -1.69
VPS39Q96JC1 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC4.5□□□□□ -1.69
VPS39Q96JC1 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC4.5□□□□□ -1.69
VPS39Q96JC1 MIR4737-201ENST00000583979 81 ntBASIC4.5□□□□□ -1.69
VPS39Q96JC1 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.5□□□□□ -1.69
VPS39Q96JC1 AL133338.2-201ENST00000604292 736 ntBASIC4.5□□□□□ -1.69
VPS39Q96JC1 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC4.5□□□□□ -1.69
VPS39Q96JC1 AC099669.2-201ENST00000616549 437 ntBASIC4.5□□□□□ -1.69
VPS39Q96JC1 AK6-205ENST00000618980 483 ntTSL 2 BASIC4.5□□□□□ -1.69
VPS39Q96JC1 AL445528.2-201ENST00000620582 470 ntBASIC4.5□□□□□ -1.69
VPS39Q96JC1 PDCD6IPP1-202ENST00000622242 1064 ntBASIC4.5□□□□□ -1.69
VPS39Q96JC1 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC4.5□□□□□ -1.69
VPS39Q96JC1 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.5□□□□□ -1.69
VPS39Q96JC1 AC020763.5-201ENST00000623298 430 ntBASIC4.5□□□□□ -1.69
VPS39Q96JC1 AC067931.1-201ENST00000624190 671 ntBASIC4.5□□□□□ -1.69
VPS39Q96JC1 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC4.5□□□□□ -1.69
VPS39Q96JC1 AC055839.1-201ENST00000634467 498 ntBASIC4.5□□□□□ -1.69
VPS39Q96JC1 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.5□□□□□ -1.69
VPS39Q96JC1 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
VPS39Q96JC1 AC025125.1-201ENST00000624743 1922 ntBASIC4.5□□□□□ -1.69
VPS39Q96JC1 CPHL1P-201ENST00000461341 3407 ntBASIC4.5□□□□□ -1.69
VPS39Q96JC1 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC4.5□□□□□ -1.69
VPS39Q96JC1 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
VPS39Q96JC1 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.5□□□□□ -1.69
VPS39Q96JC1 AC125257.1-201ENST00000560400 2930 ntBASIC4.49□□□□□ -1.69
VPS39Q96JC1 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.49□□□□□ -1.69
VPS39Q96JC1 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
VPS39Q96JC1 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
VPS39Q96JC1 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
VPS39Q96JC1 OR11H5P-202ENST00000641612 1325 ntBASIC4.49□□□□□ -1.69
VPS39Q96JC1 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.49□□□□□ -1.69
VPS39Q96JC1 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.49□□□□□ -1.69
VPS39Q96JC1 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.49□□□□□ -1.69
VPS39Q96JC1 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
VPS39Q96JC1 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
VPS39Q96JC1 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
VPS39Q96JC1 MIR298-201ENST00000401212 88 ntBASIC4.49□□□□□ -1.69
VPS39Q96JC1 OR1F12-201ENST00000402365 945 ntBASIC4.49□□□□□ -1.69
VPS39Q96JC1 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
VPS39Q96JC1 RNU4-74P-201ENST00000411280 161 ntBASIC4.49□□□□□ -1.69
VPS39Q96JC1 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC4.49□□□□□ -1.69
VPS39Q96JC1 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC4.49□□□□□ -1.69
VPS39Q96JC1 AC007394.1-201ENST00000421941 531 ntBASIC4.49□□□□□ -1.69
VPS39Q96JC1 AC104837.2-201ENST00000427236 424 ntBASIC4.49□□□□□ -1.69
VPS39Q96JC1 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC4.49□□□□□ -1.69
VPS39Q96JC1 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.49□□□□□ -1.69
VPS39Q96JC1 DDX39BP2-208ENST00000453923 258 ntBASIC4.49□□□□□ -1.69
VPS39Q96JC1 RPS3AP53-201ENST00000454716 778 ntBASIC4.49□□□□□ -1.69
VPS39Q96JC1 EIF2S2P5-201ENST00000457635 968 ntBASIC4.49□□□□□ -1.69
VPS39Q96JC1 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC4.49□□□□□ -1.69
VPS39Q96JC1 AC018635.1-201ENST00000468292 1030 ntBASIC4.49□□□□□ -1.69
VPS39Q96JC1 RN7SL826P-201ENST00000479724 288 ntBASIC4.49□□□□□ -1.69
VPS39Q96JC1 AC011005.3-201ENST00000491624 395 ntBASIC4.49□□□□□ -1.69
VPS39Q96JC1 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC4.49□□□□□ -1.69
VPS39Q96JC1 AC025459.1-201ENST00000504072 156 ntBASIC4.49□□□□□ -1.69
VPS39Q96JC1 AC111193.1-201ENST00000504097 155 ntBASIC4.49□□□□□ -1.69
VPS39Q96JC1 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC4.49□□□□□ -1.69
VPS39Q96JC1 OR5D15P-201ENST00000531671 942 ntBASIC4.49□□□□□ -1.69
VPS39Q96JC1 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC4.49□□□□□ -1.69
VPS39Q96JC1 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC4.49□□□□□ -1.69
VPS39Q96JC1 UBE2FP2-201ENST00000566646 462 ntBASIC4.49□□□□□ -1.69
VPS39Q96JC1 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC4.49□□□□□ -1.69
VPS39Q96JC1 RN7SL176P-201ENST00000580352 264 ntBASIC4.49□□□□□ -1.69
VPS39Q96JC1 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
VPS39Q96JC1 AP001180.3-201ENST00000582221 145 ntBASIC4.49□□□□□ -1.69
VPS39Q96JC1 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC4.49□□□□□ -1.69
VPS39Q96JC1 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC4.49□□□□□ -1.69
VPS39Q96JC1 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC4.49□□□□□ -1.69
VPS39Q96JC1 IGKV1OR2-9-201ENST00000603957 287 ntBASIC4.49□□□□□ -1.69
VPS39Q96JC1 IGKV1OR2-11-201ENST00000604120 287 ntBASIC4.49□□□□□ -1.69
VPS39Q96JC1 AC025175.1-201ENST00000606482 759 ntBASIC4.49□□□□□ -1.69
VPS39Q96JC1 NAA60-237ENST00000615865 326 ntTSL 5 BASIC4.49□□□□□ -1.69
VPS39Q96JC1 U6.48-201ENST00000618523 106 ntBASIC4.49□□□□□ -1.69
VPS39Q96JC1 LINC01808-202ENST00000641680 1116 ntBASIC4.49□□□□□ -1.69
VPS39Q96JC1 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.48□□□□□ -1.69
VPS39Q96JC1 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
VPS39Q96JC1 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
VPS39Q96JC1 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
VPS39Q96JC1 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC4.48□□□□□ -1.69
VPS39Q96JC1 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.48□□□□□ -1.69
VPS39Q96JC1 ARHGAP42P1-201ENST00000507474 1976 ntBASIC4.48□□□□□ -1.69
VPS39Q96JC1 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
VPS39Q96JC1 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
VPS39Q96JC1 PIGP-204ENST00000399102 688 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
VPS39Q96JC1 AL121834.1-202ENST00000404494 277 ntBASIC4.48□□□□□ -1.69
VPS39Q96JC1 RPL23AP48-201ENST00000406913 488 ntBASIC4.48□□□□□ -1.69
VPS39Q96JC1 RN7SKP177-201ENST00000410567 355 ntBASIC4.48□□□□□ -1.69
VPS39Q96JC1 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC4.48□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 153.7 ms