Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 RNU6-666P-201ENST00000363499 107 ntBASIC5.32□□□□□ -1.56
MSX2P35548 RN7SKP250-201ENST00000363924 321 ntBASIC5.32□□□□□ -1.56
MSX2P35548 SNORA4.1-201ENST00000364263 144 ntBASIC5.32□□□□□ -1.56
MSX2P35548 S100A5-201ENST00000368717 506 ntAPPRIS P1 TSL 3 BASIC5.32□□□□□ -1.56
MSX2P35548 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC5.32□□□□□ -1.56
MSX2P35548 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
MSX2P35548 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
MSX2P35548 PSMA6P1-201ENST00000400275 741 ntBASIC5.32□□□□□ -1.56
MSX2P35548 AL354890.1-201ENST00000413730 346 ntBASIC5.32□□□□□ -1.56
MSX2P35548 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC5.32□□□□□ -1.56
MSX2P35548 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC5.32□□□□□ -1.56
MSX2P35548 SLC44A3-AS1-205ENST00000424505 612 ntBASIC5.32□□□□□ -1.56
MSX2P35548 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC5.32□□□□□ -1.56
MSX2P35548 FAM96AP1-201ENST00000430879 482 ntBASIC5.32□□□□□ -1.56
MSX2P35548 GAPDHP19-201ENST00000431768 1005 ntBASIC5.32□□□□□ -1.56
MSX2P35548 MTND1P28-201ENST00000435623 950 ntBASIC5.32□□□□□ -1.56
MSX2P35548 AC245291.3-201ENST00000443400 292 ntBASIC5.32□□□□□ -1.56
MSX2P35548 ARL5AP2-201ENST00000444698 533 ntBASIC5.32□□□□□ -1.56
MSX2P35548 COX6CP12-201ENST00000446748 202 ntBASIC5.32□□□□□ -1.56
MSX2P35548 AL035551.1-201ENST00000446931 348 ntBASIC5.32□□□□□ -1.56
MSX2P35548 AZGP1P2-201ENST00000454506 345 ntBASIC5.32□□□□□ -1.56
MSX2P35548 RPS4XP12-201ENST00000461747 709 ntBASIC5.32□□□□□ -1.56
MSX2P35548 AC096741.1-201ENST00000472250 846 ntBASIC5.32□□□□□ -1.56
MSX2P35548 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC5.32□□□□□ -1.56
MSX2P35548 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
MSX2P35548 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC5.32□□□□□ -1.56
MSX2P35548 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC5.32□□□□□ -1.56
MSX2P35548 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC5.32□□□□□ -1.56
MSX2P35548 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC5.32□□□□□ -1.56
MSX2P35548 AC116347.2-201ENST00000514912 523 ntBASIC5.32□□□□□ -1.56
MSX2P35548 RNU6-1004P-201ENST00000516584 111 ntBASIC5.32□□□□□ -1.56
MSX2P35548 IGLV3-24-201ENST00000517477 197 ntBASIC5.32□□□□□ -1.56
MSX2P35548 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC5.32□□□□□ -1.56
MSX2P35548 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC5.32□□□□□ -1.56
MSX2P35548 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC5.32□□□□□ -1.56
MSX2P35548 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC5.32□□□□□ -1.56
MSX2P35548 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
MSX2P35548 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC5.32□□□□□ -1.56
MSX2P35548 AC025260.1-201ENST00000548858 430 ntBASIC5.32□□□□□ -1.56
MSX2P35548 AL133371.1-201ENST00000555481 764 ntTSL 2 BASIC5.32□□□□□ -1.56
MSX2P35548 ZNF519P2-201ENST00000557032 169 ntBASIC5.32□□□□□ -1.56
MSX2P35548 AC010325.1-202ENST00000562076 279 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
MSX2P35548 BGLT3-201ENST00000564523 994 ntBASIC5.32□□□□□ -1.56
MSX2P35548 AP003774.2-201ENST00000569737 558 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
MSX2P35548 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC5.32□□□□□ -1.56
MSX2P35548 RN7SL290P-201ENST00000578661 300 ntBASIC5.32□□□□□ -1.56
MSX2P35548 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC5.32□□□□□ -1.56
MSX2P35548 AP005262.1-201ENST00000582646 997 ntBASIC5.32□□□□□ -1.56
MSX2P35548 MIR4701-201ENST00000583094 63 ntBASIC5.32□□□□□ -1.56
MSX2P35548 SS18L2P2-201ENST00000583960 235 ntBASIC5.32□□□□□ -1.56
MSX2P35548 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC5.32□□□□□ -1.56
MSX2P35548 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC5.32□□□□□ -1.56
MSX2P35548 AC243967.1-201ENST00000598976 578 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
MSX2P35548 AC011891.2-201ENST00000604949 397 ntBASIC5.32□□□□□ -1.56
MSX2P35548 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC5.32□□□□□ -1.56
MSX2P35548 AL359091.2-201ENST00000609303 556 ntBASIC5.32□□□□□ -1.56
MSX2P35548 AC138932.5-201ENST00000617759 563 ntBASIC5.32□□□□□ -1.56
MSX2P35548 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC5.32□□□□□ -1.56
MSX2P35548 AL136228.1-201ENST00000622221 319 ntBASIC5.32□□□□□ -1.56
MSX2P35548 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
MSX2P35548 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC5.32□□□□□ -1.56
MSX2P35548 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC5.32□□□□□ -1.56
MSX2P35548 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
MSX2P35548 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC5.32□□□□□ -1.56
MSX2P35548 AC106872.5-201ENST00000508856 1416 ntBASIC5.31□□□□□ -1.56
MSX2P35548 AC010266.2-201ENST00000564741 3255 ntBASIC5.31□□□□□ -1.56
MSX2P35548 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
MSX2P35548 AC083899.1-201ENST00000454465 3819 ntBASIC5.31□□□□□ -1.56
MSX2P35548 HSPA8P17-201ENST00000427029 1382 ntBASIC5.31□□□□□ -1.56
MSX2P35548 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
MSX2P35548 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
MSX2P35548 CRYBA1-201ENST00000225387 783 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
MSX2P35548 OR10J6P-201ENST00000289731 930 ntBASIC5.31□□□□□ -1.56
MSX2P35548 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
MSX2P35548 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
MSX2P35548 TRAV1-2-201ENST00000390423 402 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
MSX2P35548 RNA5SP241-201ENST00000391326 114 ntBASIC5.31□□□□□ -1.56
MSX2P35548 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
MSX2P35548 OR6C69P-201ENST00000394268 893 ntBASIC5.31□□□□□ -1.56
MSX2P35548 RN7SKP59-201ENST00000410520 314 ntBASIC5.31□□□□□ -1.56
MSX2P35548 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC5.31□□□□□ -1.56
MSX2P35548 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC5.31□□□□□ -1.56
MSX2P35548 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC5.31□□□□□ -1.56
MSX2P35548 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
MSX2P35548 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC5.31□□□□□ -1.56
MSX2P35548 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC5.31□□□□□ -1.56
MSX2P35548 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC5.31□□□□□ -1.56
MSX2P35548 RPS25P9-201ENST00000435591 252 ntBASIC5.31□□□□□ -1.56
MSX2P35548 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC5.31□□□□□ -1.56
MSX2P35548 LINC00867-203ENST00000445161 580 ntTSL 2 BASIC5.31□□□□□ -1.56
MSX2P35548 NANOGNBP1-201ENST00000448444 480 ntBASIC5.31□□□□□ -1.56
MSX2P35548 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
MSX2P35548 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC5.31□□□□□ -1.56
MSX2P35548 MTND2P24-201ENST00000453434 806 ntBASIC5.31□□□□□ -1.56
MSX2P35548 NXT1P1-201ENST00000458481 316 ntBASIC5.31□□□□□ -1.56
MSX2P35548 RPL31P58-201ENST00000469001 379 ntBASIC5.31□□□□□ -1.56
MSX2P35548 HMGB1P36-201ENST00000487709 576 ntBASIC5.31□□□□□ -1.56
MSX2P35548 OR4G11P-201ENST00000492842 939 ntBASIC5.31□□□□□ -1.56
MSX2P35548 FCF1P3-201ENST00000496394 590 ntBASIC5.31□□□□□ -1.56
MSX2P35548 AC091874.2-201ENST00000505889 720 ntBASIC5.31□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms