Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC4.97□□□□□ -1.61
VPS28Q9UK41 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.97□□□□□ -1.61
VPS28Q9UK41 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
VPS28Q9UK41 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
VPS28Q9UK41 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC4.97□□□□□ -1.61
VPS28Q9UK41 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.97□□□□□ -1.61
VPS28Q9UK41 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC4.97□□□□□ -1.61
VPS28Q9UK41 AC073055.1-201ENST00000456901 1621 ntBASIC4.97□□□□□ -1.61
VPS28Q9UK41 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
VPS28Q9UK41 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
VPS28Q9UK41 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.61
VPS28Q9UK41 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC4.96□□□□□ -1.61
VPS28Q9UK41 CASC19-204ENST00000641001 2055 ntBASIC4.96□□□□□ -1.61
VPS28Q9UK41 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.61
VPS28Q9UK41 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.96□□□□□ -1.61
VPS28Q9UK41 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.96□□□□□ -1.61
VPS28Q9UK41 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
VPS28Q9UK41 AC021242.1-201ENST00000507315 2035 ntBASIC4.96□□□□□ -1.62
VPS28Q9UK41 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
VPS28Q9UK41 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
VPS28Q9UK41 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
VPS28Q9UK41 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC4.96□□□□□ -1.62
VPS28Q9UK41 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
VPS28Q9UK41 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC4.96□□□□□ -1.62
VPS28Q9UK41 MIR525-201ENST00000384978 85 ntBASIC4.96□□□□□ -1.62
VPS28Q9UK41 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC4.96□□□□□ -1.62
VPS28Q9UK41 SNORA11C-201ENST00000408532 129 ntBASIC4.96□□□□□ -1.62
VPS28Q9UK41 RNA5SP345-201ENST00000410646 108 ntBASIC4.96□□□□□ -1.62
VPS28Q9UK41 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC4.96□□□□□ -1.62
VPS28Q9UK41 AC114814.2-201ENST00000419195 485 ntBASIC4.96□□□□□ -1.62
VPS28Q9UK41 AC004074.1-201ENST00000421810 1063 ntBASIC4.96□□□□□ -1.62
VPS28Q9UK41 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC4.96□□□□□ -1.62
VPS28Q9UK41 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC4.96□□□□□ -1.62
VPS28Q9UK41 FO393414.1-201ENST00000428697 1184 ntBASIC4.96□□□□□ -1.62
VPS28Q9UK41 USP9YP9-201ENST00000429406 715 ntBASIC4.96□□□□□ -1.62
VPS28Q9UK41 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC4.96□□□□□ -1.62
VPS28Q9UK41 CEACAMP1-201ENST00000434624 1035 ntBASIC4.96□□□□□ -1.62
VPS28Q9UK41 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC4.96□□□□□ -1.62
VPS28Q9UK41 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC4.96□□□□□ -1.62
VPS28Q9UK41 AC044797.1-201ENST00000445744 679 ntBASIC4.96□□□□□ -1.62
VPS28Q9UK41 RN7SL517P-201ENST00000462240 305 ntBASIC4.96□□□□□ -1.62
VPS28Q9UK41 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC4.96□□□□□ -1.62
VPS28Q9UK41 FTH1P24-201ENST00000503502 462 ntBASIC4.96□□□□□ -1.62
VPS28Q9UK41 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC4.96□□□□□ -1.62
VPS28Q9UK41 AC008494.2-201ENST00000514544 370 ntBASIC4.96□□□□□ -1.62
VPS28Q9UK41 RNA5SP249-201ENST00000516127 99 ntBASIC4.96□□□□□ -1.62
VPS28Q9UK41 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC4.96□□□□□ -1.62
VPS28Q9UK41 AC010476.1-201ENST00000519111 851 ntBASIC4.96□□□□□ -1.62
VPS28Q9UK41 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC4.96□□□□□ -1.62
VPS28Q9UK41 MAL2-201ENST00000522112 573 ntTSL 4 BASIC4.96□□□□□ -1.62
VPS28Q9UK41 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
VPS28Q9UK41 AC091042.1-201ENST00000579213 173 ntBASIC4.96□□□□□ -1.62
VPS28Q9UK41 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC4.96□□□□□ -1.62
VPS28Q9UK41 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC4.96□□□□□ -1.62
VPS28Q9UK41 AC119501.1-201ENST00000603646 475 ntBASIC4.96□□□□□ -1.62
VPS28Q9UK41 SNORD91B-202ENST00000608459 222 ntBASIC4.96□□□□□ -1.62
VPS28Q9UK41 AC097505.1-201ENST00000610199 565 ntBASIC4.96□□□□□ -1.62
VPS28Q9UK41 FAM27B-201ENST00000610601 213 ntBASIC4.96□□□□□ -1.62
VPS28Q9UK41 AC009704.2-201ENST00000618739 483 ntBASIC4.96□□□□□ -1.62
VPS28Q9UK41 AL022401.1-201ENST00000619498 108 ntBASIC4.96□□□□□ -1.62
VPS28Q9UK41 AC015804.1-201ENST00000622935 435 ntBASIC4.96□□□□□ -1.62
VPS28Q9UK41 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
VPS28Q9UK41 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.96□□□□□ -1.62
VPS28Q9UK41 AC007529.1-201ENST00000418574 2178 ntBASIC4.96□□□□□ -1.62
VPS28Q9UK41 AC009643.2-201ENST00000603543 1448 ntBASIC4.96□□□□□ -1.62
VPS28Q9UK41 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
VPS28Q9UK41 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
VPS28Q9UK41 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC4.95□□□□□ -1.62
VPS28Q9UK41 NCLP2-201ENST00000416078 1462 ntBASIC4.95□□□□□ -1.62
VPS28Q9UK41 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
VPS28Q9UK41 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
VPS28Q9UK41 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.95□□□□□ -1.62
VPS28Q9UK41 MTCO1P6-201ENST00000481192 1384 ntBASIC4.95□□□□□ -1.62
VPS28Q9UK41 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
VPS28Q9UK41 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.95□□□□□ -1.62
VPS28Q9UK41 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
VPS28Q9UK41 RNU6-207P-201ENST00000384137 107 ntBASIC4.95□□□□□ -1.62
VPS28Q9UK41 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
VPS28Q9UK41 AP000580.1-201ENST00000404439 358 ntBASIC4.95□□□□□ -1.62
VPS28Q9UK41 RPL37P18-201ENST00000411602 243 ntBASIC4.95□□□□□ -1.62
VPS28Q9UK41 AC069282.1-201ENST00000411911 526 ntBASIC4.95□□□□□ -1.62
VPS28Q9UK41 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
VPS28Q9UK41 AC073136.2-201ENST00000417282 849 ntBASIC4.95□□□□□ -1.62
VPS28Q9UK41 MTND2P15-201ENST00000418575 892 ntBASIC4.95□□□□□ -1.62
VPS28Q9UK41 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
VPS28Q9UK41 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC4.95□□□□□ -1.62
VPS28Q9UK41 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC4.95□□□□□ -1.62
VPS28Q9UK41 OR2B7P-201ENST00000429302 934 ntBASIC4.95□□□□□ -1.62
VPS28Q9UK41 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC4.95□□□□□ -1.62
VPS28Q9UK41 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC4.95□□□□□ -1.62
VPS28Q9UK41 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC4.95□□□□□ -1.62
VPS28Q9UK41 ZNF736P1Y-201ENST00000440402 1276 ntBASIC4.95□□□□□ -1.62
VPS28Q9UK41 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
VPS28Q9UK41 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
VPS28Q9UK41 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
VPS28Q9UK41 HMGN1P5-201ENST00000448591 263 ntBASIC4.95□□□□□ -1.62
VPS28Q9UK41 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC4.95□□□□□ -1.62
VPS28Q9UK41 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC4.95□□□□□ -1.62
VPS28Q9UK41 AC096992.1-201ENST00000459808 709 ntBASIC4.95□□□□□ -1.62
VPS28Q9UK41 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC4.95□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 111.8 ms