Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC4.68□□□□□ -1.66
HDDC3Q8N4P3 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC4.68□□□□□ -1.66
HDDC3Q8N4P3 CBX1P1-201ENST00000440184 427 ntBASIC4.68□□□□□ -1.66
HDDC3Q8N4P3 AC108463.1-201ENST00000450258 347 ntBASIC4.68□□□□□ -1.66
HDDC3Q8N4P3 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
HDDC3Q8N4P3 RPL7P32-201ENST00000457119 744 ntBASIC4.68□□□□□ -1.66
HDDC3Q8N4P3 RNA5SP103-201ENST00000459503 118 ntBASIC4.68□□□□□ -1.66
HDDC3Q8N4P3 HMGB3P14-201ENST00000494195 599 ntBASIC4.68□□□□□ -1.66
HDDC3Q8N4P3 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC4.68□□□□□ -1.66
HDDC3Q8N4P3 CDV3-208ENST00000511392 554 ntTSL 5 BASIC4.68□□□□□ -1.66
HDDC3Q8N4P3 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC4.68□□□□□ -1.66
HDDC3Q8N4P3 AC087477.6-201ENST00000559595 843 ntBASIC4.68□□□□□ -1.66
HDDC3Q8N4P3 AC105129.1-201ENST00000560250 297 ntBASIC4.68□□□□□ -1.66
HDDC3Q8N4P3 AC084783.1-201ENST00000565846 910 ntBASIC4.68□□□□□ -1.66
HDDC3Q8N4P3 AC093227.2-201ENST00000589357 285 ntBASIC4.68□□□□□ -1.66
HDDC3Q8N4P3 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC4.68□□□□□ -1.66
HDDC3Q8N4P3 KATNBL1P1-201ENST00000605192 748 ntBASIC4.68□□□□□ -1.66
HDDC3Q8N4P3 MIR92B-201ENST00000607575 96 ntBASIC4.68□□□□□ -1.66
HDDC3Q8N4P3 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.68□□□□□ -1.66
HDDC3Q8N4P3 CR392039.4-201ENST00000624968 501 ntBASIC4.68□□□□□ -1.66
HDDC3Q8N4P3 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
HDDC3Q8N4P3 OR14L1P-202ENST00000641545 3009 ntBASIC4.68□□□□□ -1.66
HDDC3Q8N4P3 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
HDDC3Q8N4P3 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC4.68□□□□□ -1.66
HDDC3Q8N4P3 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
HDDC3Q8N4P3 AL592437.2-201ENST00000421655 2434 ntBASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 FTO-203ENST00000460382 1517 ntTSL 5 BASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 AC025031.4-201ENST00000621248 3271 ntBASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 GLS-204ENST00000409428 816 ntTSL 2 BASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 RNU4-74P-201ENST00000411280 161 ntBASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 OR51B3P-201ENST00000412287 913 ntBASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 AC004938.1-201ENST00000438468 308 ntBASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 AC044797.1-201ENST00000445744 679 ntBASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 MTND2P8-201ENST00000450555 1025 ntBASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 C2orf80-207ENST00000453017 722 ntTSL 3 BASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 RPL23AP24-201ENST00000458203 385 ntBASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 RNU6ATAC28P-201ENST00000459249 118 ntBASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 AC025164.1-201ENST00000496249 478 ntBASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 PPM1AP1-201ENST00000502740 1135 ntBASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 AC111193.1-201ENST00000504097 155 ntBASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 SNORA31.9-201ENST00000516429 84 ntBASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 TBCA-203ENST00000517679 545 ntTSL 3 BASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 AL109741.3-201ENST00000561748 592 ntBASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 AC069366.1-201ENST00000583159 838 ntBASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 ZNF92P3-201ENST00000596594 954 ntBASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 AC020658.4-201ENST00000613987 684 ntBASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 AL133243.1-201ENST00000614487 366 ntBASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 AP003072.4-201ENST00000624580 310 ntBASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 CARF-203ENST00000414439 2099 ntTSL 2 BASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 AC100871.1-201ENST00000507871 1456 ntBASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 MFSD8-242ENST00000641690 4199 ntBASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC4.67□□□□□ -1.66
HDDC3Q8N4P3 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
HDDC3Q8N4P3 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
HDDC3Q8N4P3 RNF6P1-201ENST00000444889 1784 ntBASIC4.66□□□□□ -1.66
HDDC3Q8N4P3 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
HDDC3Q8N4P3 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.66□□□□□ -1.66
HDDC3Q8N4P3 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC4.66□□□□□ -1.66
HDDC3Q8N4P3 VN1R37P-201ENST00000419096 748 ntBASIC4.66□□□□□ -1.66
HDDC3Q8N4P3 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC4.66□□□□□ -1.66
HDDC3Q8N4P3 BMS1P19-201ENST00000433925 393 ntBASIC4.66□□□□□ -1.66
HDDC3Q8N4P3 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC4.66□□□□□ -1.66
HDDC3Q8N4P3 AC104687.1-201ENST00000485829 412 ntBASIC4.66□□□□□ -1.66
HDDC3Q8N4P3 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4.66□□□□□ -1.66
HDDC3Q8N4P3 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC4.66□□□□□ -1.66
HDDC3Q8N4P3 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.66□□□□□ -1.66
HDDC3Q8N4P3 AC025459.1-201ENST00000504072 156 ntBASIC4.66□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 78.9 ms