Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC4.23□□□□□ -1.73
HOXA1P49639 NIFKP8-201ENST00000560500 874 ntBASIC4.23□□□□□ -1.73
HOXA1P49639 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC4.23□□□□□ -1.73
HOXA1P49639 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXA1P49639 AC025946.2-201ENST00000603398 234 ntBASIC4.23□□□□□ -1.73
HOXA1P49639 AC011626.1-201ENST00000604710 562 ntBASIC4.23□□□□□ -1.73
HOXA1P49639 BNIP3P4-201ENST00000604946 565 ntBASIC4.23□□□□□ -1.73
HOXA1P49639 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXA1P49639 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC4.23□□□□□ -1.73
HOXA1P49639 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC4.23□□□□□ -1.73
HOXA1P49639 AP003497.2-201ENST00000624220 967 ntBASIC4.23□□□□□ -1.73
HOXA1P49639 LINC01206-233ENST00000630063 878 ntTSL 5 BASIC4.23□□□□□ -1.73
HOXA1P49639 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC4.23□□□□□ -1.73
HOXA1P49639 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC4.23□□□□□ -1.73
HOXA1P49639 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HOXA1P49639 CD86-204ENST00000469710 1604 ntTSL 2 BASIC4.23□□□□□ -1.73
HOXA1P49639 SLC2A3P1-201ENST00000519666 1451 ntBASIC4.23□□□□□ -1.73
HOXA1P49639 IRF5P1-201ENST00000504852 2164 ntBASIC4.23□□□□□ -1.73
HOXA1P49639 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HOXA1P49639 ASNSP1-201ENST00000518311 1939 ntBASIC4.23□□□□□ -1.73
HOXA1P49639 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HOXA1P49639 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HOXA1P49639 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
HOXA1P49639 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
HOXA1P49639 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC4.22□□□□□ -1.73
HOXA1P49639 AC138393.1-206ENST00000540997 1886 ntBASIC4.22□□□□□ -1.73
HOXA1P49639 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXA1P49639 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
HOXA1P49639 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC4.22□□□□□ -1.73
HOXA1P49639 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
HOXA1P49639 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
HOXA1P49639 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
HOXA1P49639 IGKV7-3-201ENST00000357453 298 ntBASIC4.22□□□□□ -1.73
HOXA1P49639 RNU4-40P-201ENST00000364351 143 ntBASIC4.22□□□□□ -1.73
HOXA1P49639 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
HOXA1P49639 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
HOXA1P49639 SNORA16A-201ENST00000384342 137 ntBASIC4.22□□□□□ -1.73
HOXA1P49639 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC4.22□□□□□ -1.73
HOXA1P49639 LRRC37BP1-201ENST00000398851 714 ntBASIC4.22□□□□□ -1.73
HOXA1P49639 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC4.22□□□□□ -1.73
HOXA1P49639 DCN-203ENST00000420120 753 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HOXA1P49639 AC004448.2-201ENST00000422360 586 ntBASIC4.22□□□□□ -1.73
HOXA1P49639 TNPO1P1-201ENST00000423641 1138 ntBASIC4.22□□□□□ -1.73
HOXA1P49639 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HOXA1P49639 SKP1P3-201ENST00000429280 487 ntBASIC4.22□□□□□ -1.73
HOXA1P49639 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXA1P49639 HIGD1AP4-201ENST00000430194 280 ntBASIC4.22□□□□□ -1.73
HOXA1P49639 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXA1P49639 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC4.22□□□□□ -1.73
HOXA1P49639 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
HOXA1P49639 AL161722.2-201ENST00000434731 981 ntBASIC4.22□□□□□ -1.73
HOXA1P49639 CLUHP1-201ENST00000435012 1190 ntBASIC4.22□□□□□ -1.73
HOXA1P49639 AP000936.3-201ENST00000438127 255 ntBASIC4.22□□□□□ -1.73
HOXA1P49639 DCN-205ENST00000441303 519 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HOXA1P49639 RPS11P7-201ENST00000442125 465 ntBASIC4.22□□□□□ -1.73
HOXA1P49639 GAPDHP25-201ENST00000447061 1001 ntBASIC4.22□□□□□ -1.73
HOXA1P49639 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC4.22□□□□□ -1.73
HOXA1P49639 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC4.22□□□□□ -1.73
HOXA1P49639 DNAJB5P1-201ENST00000454004 806 ntBASIC4.22□□□□□ -1.73
HOXA1P49639 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC4.22□□□□□ -1.73
HOXA1P49639 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXA1P49639 AC068631.1-205ENST00000455926 409 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXA1P49639 AL133244.1-201ENST00000456007 258 ntBASIC4.22□□□□□ -1.73
HOXA1P49639 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HOXA1P49639 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC4.22□□□□□ -1.73
HOXA1P49639 AC091180.1-201ENST00000462104 372 ntBASIC4.22□□□□□ -1.73
HOXA1P49639 RN7SL517P-201ENST00000462240 305 ntBASIC4.22□□□□□ -1.73
HOXA1P49639 AC006967.1-201ENST00000467608 589 ntBASIC4.22□□□□□ -1.73
HOXA1P49639 OR2A1-AS1-202ENST00000467944 422 ntBASIC4.22□□□□□ -1.73
HOXA1P49639 RN7SL51P-201ENST00000468230 285 ntBASIC4.22□□□□□ -1.73
HOXA1P49639 RPL37P23-201ENST00000492641 294 ntBASIC4.22□□□□□ -1.73
HOXA1P49639 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXA1P49639 PRELID3BP7-201ENST00000503606 469 ntBASIC4.22□□□□□ -1.73
HOXA1P49639 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC4.22□□□□□ -1.73
HOXA1P49639 AC104108.1-201ENST00000509930 412 ntBASIC4.22□□□□□ -1.73
HOXA1P49639 AC018797.3-201ENST00000513388 1241 ntBASIC4.22□□□□□ -1.73
HOXA1P49639 RNA5SP154-201ENST00000516193 111 ntBASIC4.22□□□□□ -1.73
HOXA1P49639 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC4.22□□□□□ -1.73
HOXA1P49639 IGKV2D-10-201ENST00000520194 281 ntBASIC4.22□□□□□ -1.73
HOXA1P49639 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXA1P49639 AC090819.1-201ENST00000523800 1111 ntBASIC4.22□□□□□ -1.73
HOXA1P49639 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC4.22□□□□□ -1.73
HOXA1P49639 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXA1P49639 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC4.22□□□□□ -1.73
HOXA1P49639 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXA1P49639 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
HOXA1P49639 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXA1P49639 AC009094.1-201ENST00000564443 426 ntBASIC4.22□□□□□ -1.73
HOXA1P49639 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HOXA1P49639 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXA1P49639 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC4.22□□□□□ -1.73
HOXA1P49639 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC4.22□□□□□ -1.73
HOXA1P49639 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC4.22□□□□□ -1.73
HOXA1P49639 BNIP3P24-201ENST00000593398 557 ntBASIC4.22□□□□□ -1.73
HOXA1P49639 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC4.22□□□□□ -1.73
HOXA1P49639 AC021171.1-201ENST00000603137 706 ntBASIC4.22□□□□□ -1.73
HOXA1P49639 AC108865.2-201ENST00000606881 432 ntBASIC4.22□□□□□ -1.73
HOXA1P49639 AP000238.1-201ENST00000608759 426 ntBASIC4.22□□□□□ -1.73
HOXA1P49639 MIR6071-201ENST00000616741 78 ntBASIC4.22□□□□□ -1.73
HOXA1P49639 AC132068.1-201ENST00000623805 459 ntBASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 96.8 ms