Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 RPS29-202ENST00000396020 7062 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 RBMX2P2-201ENST00000257020 946 ntBASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 FAM205C-201ENST00000340783 983 ntAPPRIS ALT2 TSL 4 BASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 SGMS1-201ENST00000361543 1096 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 Y_RNA.200-201ENST00000364018 102 ntBASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 SNORA62.2-201ENST00000364672 152 ntBASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 RNU6-343P-201ENST00000364709 104 ntBASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 HMGB3P1-201ENST00000393368 573 ntBASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 AC099535.1-201ENST00000408928 371 ntBASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 RNU6-55P-201ENST00000411092 107 ntBASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 AC023141.10-201ENST00000415634 200 ntBASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 AL590714.1-201ENST00000420498 379 ntTSL 3 BASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 AC012065.2-201ENST00000421295 375 ntBASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 RPL12P34-201ENST00000424532 479 ntBASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 P3H2-203ENST00000427335 2963 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 AL353653.1-202ENST00000435177 539 ntTSL 3 BASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 AC002553.1-201ENST00000442828 802 ntBASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 FUNDC2P2-202ENST00000443452 493 ntBASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 NANOGP10-201ENST00000453325 895 ntBASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 AC011005.4-201ENST00000466717 535 ntTSL 3 BASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 PABPC1P3-201ENST00000469174 459 ntBASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 AC093852.1-201ENST00000503587 266 ntBASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 AC006487.2-201ENST00000503624 577 ntTSL 4 BASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 OR7E83P-201ENST00000511021 970 ntBASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 AC022182.1-202ENST00000529234 580 ntTSL 2 BASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 OR7E96P-201ENST00000530816 976 ntBASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 OR11H5P-201ENST00000554039 926 ntBASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 AC010761.6-201ENST00000587898 197 ntTSL 3 BASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 AC011500.1-201ENST00000601963 469 ntBASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 AC010900.2-201ENST00000604508 210 ntBASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 RAC1P9-201ENST00000604990 392 ntBASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 U47924.1-201ENST00000606539 434 ntBASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 MIR6829-201ENST00000620375 67 ntBASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 UOX-205ENST00000640983 544 ntTSL 4 BASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 BDNF-212ENST00000525528 4766 ntAPPRIS P1 BASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 ARHGAP32-202ENST00000392657 6556 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 TDRKH-201ENST00000368822 3093 ntAPPRIS P2 TSL 5 BASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 SP140-205ENST00000420434 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 ZNF502-201ENST00000296091 3270 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 ADAMTS9-AS2-202ENST00000474768 2388 ntTSL 2 BASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 KIAA0586-201ENST00000261244 4807 ntAPPRIS P3 TSL 1 (best) BASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 CLCC1-203ENST00000356970 4803 ntAPPRIS ALT2 TSL 5 BASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 MEF2C-244ENST00000636998 5936 ntTSL 5 BASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 CNOT1-216ENST00000569240 7660 ntAPPRIS ALT1 TSL 1 (best) BASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 RNF14-204ENST00000394519 4173 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC7.41□□□□□ -1.22
VPS9D1Q9Y2B5 TRIP11-201ENST00000267622 9996 ntAPPRIS P2 TSL 1 (best) BASIC7.4□□□□□ -1.22
VPS9D1Q9Y2B5 APOL4-212ENST00000616056 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC7.4□□□□□ -1.22
VPS9D1Q9Y2B5 SERPINB8-203ENST00000397985 3477 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
VPS9D1Q9Y2B5 OPALIN-202ENST00000393870 3578 ntTSL 3 BASIC7.4□□□□□ -1.22
VPS9D1Q9Y2B5 CTNND1-216ENST00000527467 5071 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
VPS9D1Q9Y2B5 CTNND1-229ENST00000531014 5053 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
VPS9D1Q9Y2B5 ITPR1-205ENST00000456211 9717 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
VPS9D1Q9Y2B5 CHST12-201ENST00000258711 15979 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
VPS9D1Q9Y2B5 TMBIM6-209ENST00000547798 2494 ntAPPRIS ALT2 TSL 2 BASIC7.4□□□□□ -1.22
VPS9D1Q9Y2B5 POU2F3-201ENST00000260264 2903 ntTSL 2 BASIC7.4□□□□□ -1.22
VPS9D1Q9Y2B5 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC7.4□□□□□ -1.22
VPS9D1Q9Y2B5 FIGNL1-213ENST00000615084 3368 ntAPPRIS P1 TSL 3 BASIC7.4□□□□□ -1.22
VPS9D1Q9Y2B5 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC7.4□□□□□ -1.22
VPS9D1Q9Y2B5 ZNF841-202ENST00000426391 3620 ntTSL 2 BASIC7.4□□□□□ -1.22
VPS9D1Q9Y2B5 PSEN1-201ENST00000324501 6078 ntAPPRIS P4 TSL 1 (best) BASIC7.4□□□□□ -1.22
VPS9D1Q9Y2B5 FAR2P1-201ENST00000325390 3679 ntTSL 5 BASIC7.4□□□□□ -1.22
VPS9D1Q9Y2B5 AHSP-201ENST00000302312 524 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
VPS9D1Q9Y2B5 Y_RNA.65-201ENST00000362846 100 ntBASIC7.4□□□□□ -1.22
VPS9D1Q9Y2B5 RNU1-16P-201ENST00000365477 164 ntBASIC7.4□□□□□ -1.22
VPS9D1Q9Y2B5 C1orf194-202ENST00000369945 534 ntTSL 5 BASIC7.4□□□□□ -1.22
VPS9D1Q9Y2B5 RNY1P5-201ENST00000383890 115 ntBASIC7.4□□□□□ -1.22
VPS9D1Q9Y2B5 RNU6-398P-201ENST00000384143 109 ntBASIC7.4□□□□□ -1.22
VPS9D1Q9Y2B5 GPX2-201ENST00000389614 990 ntAPPRIS P2 TSL 1 (best) BASIC7.4□□□□□ -1.22
VPS9D1Q9Y2B5 TRBV9-201ENST00000390363 390 ntAPPRIS P1 BASIC7.4□□□□□ -1.22
VPS9D1Q9Y2B5 SNORD58.1-201ENST00000391313 66 ntBASIC7.4□□□□□ -1.22
VPS9D1Q9Y2B5 AL157702.1-201ENST00000398764 426 ntBASIC7.4□□□□□ -1.22
VPS9D1Q9Y2B5 AL031679.1-201ENST00000400616 525 ntBASIC7.4□□□□□ -1.22
VPS9D1Q9Y2B5 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC7.4□□□□□ -1.22
VPS9D1Q9Y2B5 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC7.4□□□□□ -1.22
VPS9D1Q9Y2B5 EEF1GP7-201ENST00000422983 703 ntBASIC7.4□□□□□ -1.22
VPS9D1Q9Y2B5 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC7.4□□□□□ -1.22
VPS9D1Q9Y2B5 AC009299.1-201ENST00000429684 717 ntBASIC7.4□□□□□ -1.22
VPS9D1Q9Y2B5 AL049646.2-201ENST00000436848 258 ntTSL 2 BASIC7.4□□□□□ -1.22
VPS9D1Q9Y2B5 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC7.4□□□□□ -1.22
VPS9D1Q9Y2B5 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC7.4□□□□□ -1.22
VPS9D1Q9Y2B5 AC093166.3-201ENST00000448785 303 ntBASIC7.4□□□□□ -1.22
VPS9D1Q9Y2B5 GAS5-223ENST00000452197 483 ntTSL 3 BASIC7.4□□□□□ -1.22
VPS9D1Q9Y2B5 AL357143.1-201ENST00000457239 934 ntTSL 5 BASIC7.4□□□□□ -1.22
VPS9D1Q9Y2B5 AC026410.2-201ENST00000460281 156 ntBASIC7.4□□□□□ -1.22
VPS9D1Q9Y2B5 RPS4XP14-201ENST00000493072 781 ntBASIC7.4□□□□□ -1.22
VPS9D1Q9Y2B5 AC021146.3-201ENST00000511911 260 ntBASIC7.4□□□□□ -1.22
VPS9D1Q9Y2B5 Y_RNA.683-201ENST00000516508 93 ntBASIC7.4□□□□□ -1.22
VPS9D1Q9Y2B5 AC109329.1-201ENST00000518744 317 ntBASIC7.4□□□□□ -1.22
VPS9D1Q9Y2B5 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC7.4□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 75.3 ms