Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 ZBED3-AS1-216ENST00000515356 1987 ntTSL 2 BASIC8.91□□□□□ -0.98
TRIM35Q9UPQ4 NFIB-218ENST00000636432 1953 ntTSL 5 BASIC8.91□□□□□ -0.98
TRIM35Q9UPQ4 AC018765.1-201ENST00000623357 3446 ntBASIC8.91□□□□□ -0.98
TRIM35Q9UPQ4 SMG1-202ENST00000446231 16115 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
TRIM35Q9UPQ4 TMBIM6-202ENST00000395006 2598 ntAPPRIS P3 TSL 1 (best) BASIC8.91□□□□□ -0.98
TRIM35Q9UPQ4 KIF27-201ENST00000297814 4653 ntAPPRIS P3 TSL 1 (best) BASIC8.91□□□□□ -0.98
TRIM35Q9UPQ4 DNA2-203ENST00000399180 3207 ntTSL 2 BASIC8.91□□□□□ -0.98
TRIM35Q9UPQ4 KPNA2P1-201ENST00000458289 1591 ntBASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 PTPRB-209ENST00000550857 5839 ntAPPRIS ALT2 TSL 1 (best) BASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 NCALD-201ENST00000220931 3283 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 ASB4-202ENST00000325885 3825 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 TSHZ2-203ENST00000603338 3803 ntTSL 2 BASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 OR1L8-202ENST00000641027 2024 ntAPPRIS P1 BASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 LINC01876-209ENST00000638047 1983 ntTSL 5 BASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 AL049555.1-201ENST00000562834 1933 ntBASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 Z97989.1-201ENST00000531702 2421 ntBASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 NEUROD4-201ENST00000242994 3953 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 ZFYVE9-204ENST00000371591 4874 ntAPPRIS P4 TSL 1 (best) BASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 RPL21P1-201ENST00000399532 476 ntBASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 AC073264.1-201ENST00000411508 416 ntBASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 UBE2V1P14-201ENST00000415815 558 ntBASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 UBE2FP1-201ENST00000416536 447 ntBASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 AL353777.1-201ENST00000425552 326 ntBASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 AC010148.1-201ENST00000427619 707 ntTSL 3 BASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 AC096677.2-201ENST00000430471 598 ntTSL 5 BASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 RPS15AP10-201ENST00000432472 382 ntBASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 RPL21P110-201ENST00000433345 446 ntBASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 RSU1P2-202ENST00000437884 485 ntBASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 AC016722.1-201ENST00000453936 652 ntTSL 5 BASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 HNRNPDLP3-201ENST00000456745 380 ntBASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 AC006512.1-201ENST00000468816 291 ntBASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 AC004062.1-201ENST00000509926 645 ntBASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 RNU6-475P-201ENST00000516073 104 ntBASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 RNU4ATAC7P-201ENST00000516280 125 ntBASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 IGKV2D-38-201ENST00000518423 240 ntBASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 MYL12AP1-201ENST00000518490 515 ntBASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 AP000857.1-201ENST00000532151 543 ntBASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 AC119044.1-202ENST00000548463 339 ntTSL 2 BASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 GNG2-203ENST00000553432 577 ntTSL 4 BASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 AL356017.1-201ENST00000556796 594 ntTSL 4 BASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 LINC01916-201ENST00000582028 559 ntTSL 4 BASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 AP001029.3-201ENST00000588063 596 ntBASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 AC131009.3-201ENST00000621809 287 ntBASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 ARHGEF12-201ENST00000356641 6891 ntTSL 5 BASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 LINC00922-203ENST00000569736 1760 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 ARHGAP20-205ENST00000529591 2623 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 ZHX3-205ENST00000432768 3551 ntAPPRIS P1 TSL 2 BASIC8.9□□□□□ -0.98
TRIM35Q9UPQ4 AC097714.1-201ENST00000511272 1647 ntBASIC8.9□□□□□ -0.99
TRIM35Q9UPQ4 VIRMA-202ENST00000421249 3924 ntTSL 1 (best) BASIC8.9□□□□□ -0.99
TRIM35Q9UPQ4 TOGARAM2-201ENST00000379558 12691 ntAPPRIS P1 TSL 5 BASIC8.9□□□□□ -0.99
TRIM35Q9UPQ4 AC006058.1-201ENST00000568686 5067 ntBASIC8.9□□□□□ -0.99
TRIM35Q9UPQ4 AC091812.1-201ENST00000432235 1948 ntBASIC8.9□□□□□ -0.99
TRIM35Q9UPQ4 AC107884.1-202ENST00000622955 2703 ntTSL 5 BASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 SOX6-208ENST00000527619 2699 ntAPPRIS ALT2 TSL 1 (best) BASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 TMEFF2-203ENST00000409056 3364 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 UEVLD-202ENST00000320750 1799 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 AMY1B-202ENST00000370080 1787 ntAPPRIS P1 TSL 2 BASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 FBXO43-201ENST00000428847 2886 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 KCNA2-214ENST00000640774 6673 ntTSL 5 BASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 FAM83B-201ENST00000306858 3167 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 PGK2-201ENST00000304801 1657 ntAPPRIS P1 BASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 CLEC1A-204ENST00000457018 1686 ntAPPRIS ALT2 TSL 2 BASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 PDE8B-208ENST00000505283 3474 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 MCF2L2-203ENST00000447025 2394 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 RNU4-1-201ENST00000363925 141 ntBASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 PPIAP9-201ENST00000403866 498 ntBASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 AL136100.1-201ENST00000407696 330 ntBASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 RPL21P24-201ENST00000413752 448 ntBASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 ARL5AP1-201ENST00000418991 388 ntBASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 PSMA6P3-201ENST00000428242 164 ntBASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 TRGVB-201ENST00000453257 471 ntBASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 SSBP1-205ENST00000465582 731 ntAPPRIS P1 TSL 5 BASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 RN7SL70P-201ENST00000478322 302 ntBASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 AL049874.2-201ENST00000492636 288 ntBASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 RNU6-410P-201ENST00000517006 107 ntBASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 RNU6-699P-201ENST00000517081 110 ntBASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 IGHV3-63-201ENST00000518422 341 ntBASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 AC027309.2-201ENST00000520566 192 ntBASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 AC022616.4-201ENST00000522985 181 ntBASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 AC117373.1-201ENST00000544036 392 ntTSL 3 BASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 LINC02406-201ENST00000553029 546 ntTSL 3 BASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 Metazoa_SRP.129-201ENST00000619776 251 ntBASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 U6.104-201ENST00000637979 90 ntBASIC8.89□□□□□ -0.99
TRIM35Q9UPQ4 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC8.89□□□□□ -0.99
Retrieved 100 of 98,524 protein–RNA pairs in 80.3 ms