Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
NKX3-1Q99801 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.17□□□□□ -1.74
NKX3-1Q99801 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.16□□□□□ -1.74
NKX3-1Q99801 AC053481.2-202ENST00000582394 1500 ntBASIC4.16□□□□□ -1.74
NKX3-1Q99801 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
NKX3-1Q99801 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
NKX3-1Q99801 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
NKX3-1Q99801 AL445487.1-201ENST00000415694 1580 ntBASIC4.16□□□□□ -1.74
NKX3-1Q99801 OR51H2P-202ENST00000641424 3046 ntBASIC4.16□□□□□ -1.74
NKX3-1Q99801 METTL21EP-201ENST00000298105 713 ntBASIC4.16□□□□□ -1.74
NKX3-1Q99801 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
NKX3-1Q99801 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC4.16□□□□□ -1.74
NKX3-1Q99801 RNA5SP305-201ENST00000362665 119 ntBASIC4.16□□□□□ -1.74
NKX3-1Q99801 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
NKX3-1Q99801 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC4.16□□□□□ -1.74
NKX3-1Q99801 ARL4AP5-201ENST00000404372 599 ntBASIC4.16□□□□□ -1.74
NKX3-1Q99801 U3.35-201ENST00000408405 208 ntBASIC4.16□□□□□ -1.74
NKX3-1Q99801 RNU6-584P-201ENST00000410350 95 ntBASIC4.16□□□□□ -1.74
NKX3-1Q99801 AC092638.1-201ENST00000411966 1275 ntBASIC4.16□□□□□ -1.74
NKX3-1Q99801 MTCO2P8-201ENST00000412213 658 ntBASIC4.16□□□□□ -1.74
NKX3-1Q99801 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC4.16□□□□□ -1.74
NKX3-1Q99801 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC4.16□□□□□ -1.74
NKX3-1Q99801 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC4.16□□□□□ -1.74
NKX3-1Q99801 AC246680.2-201ENST00000422106 389 ntBASIC4.16□□□□□ -1.74
NKX3-1Q99801 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC4.16□□□□□ -1.74
NKX3-1Q99801 AC115285.1-201ENST00000424879 736 ntBASIC4.16□□□□□ -1.74
NKX3-1Q99801 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC4.16□□□□□ -1.74
NKX3-1Q99801 RBMY2QP-201ENST00000429799 1147 ntBASIC4.16□□□□□ -1.74
NKX3-1Q99801 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC4.16□□□□□ -1.74
NKX3-1Q99801 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC4.16□□□□□ -1.74
NKX3-1Q99801 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
NKX3-1Q99801 AC092685.1-201ENST00000447960 1243 ntBASIC4.16□□□□□ -1.74
NKX3-1Q99801 TRY2P-201ENST00000448860 689 ntBASIC4.16□□□□□ -1.74
NKX3-1Q99801 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC4.16□□□□□ -1.74
NKX3-1Q99801 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
NKX3-1Q99801 RPS4XP6-201ENST00000477670 797 ntBASIC4.16□□□□□ -1.74
NKX3-1Q99801 AC090114.3-201ENST00000479267 829 ntBASIC4.16□□□□□ -1.74
NKX3-1Q99801 RN7SL97P-201ENST00000486780 299 ntBASIC4.16□□□□□ -1.74
NKX3-1Q99801 TRAV31-201ENST00000502780 342 ntBASIC4.16□□□□□ -1.74
NKX3-1Q99801 ARL4AP1-201ENST00000503220 705 ntBASIC4.16□□□□□ -1.74
NKX3-1Q99801 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
NKX3-1Q99801 RNA5SP360-201ENST00000516555 118 ntBASIC4.16□□□□□ -1.74
NKX3-1Q99801 RN7SKP260-201ENST00000516907 149 ntBASIC4.16□□□□□ -1.74
NKX3-1Q99801 IGHVII-44-2-201ENST00000517728 250 ntBASIC4.16□□□□□ -1.74
NKX3-1Q99801 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC4.16□□□□□ -1.74
NKX3-1Q99801 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
NKX3-1Q99801 AC011611.5-201ENST00000552477 578 ntBASIC4.16□□□□□ -1.74
NKX3-1Q99801 FKBP1BP1-201ENST00000553366 325 ntBASIC4.16□□□□□ -1.74
NKX3-1Q99801 NOP10-202ENST00000557912 436 ntTSL 2 BASIC4.16□□□□□ -1.74
NKX3-1Q99801 MIR4646-201ENST00000580775 63 ntBASIC4.16□□□□□ -1.74
NKX3-1Q99801 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC4.16□□□□□ -1.74
NKX3-1Q99801 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC4.16□□□□□ -1.74
NKX3-1Q99801 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC4.16□□□□□ -1.74
NKX3-1Q99801 AC233280.2-201ENST00000603917 1070 ntBASIC4.16□□□□□ -1.74
NKX3-1Q99801 AC097505.1-201ENST00000610199 565 ntBASIC4.16□□□□□ -1.74
NKX3-1Q99801 AC234782.5-201ENST00000617723 324 ntBASIC4.16□□□□□ -1.74
NKX3-1Q99801 AL353662.3-201ENST00000625131 237 ntBASIC4.16□□□□□ -1.74
NKX3-1Q99801 TEX41-254ENST00000626394 423 ntTSL 5 BASIC4.16□□□□□ -1.74
NKX3-1Q99801 AL596275.2-204ENST00000641628 552 ntBASIC4.16□□□□□ -1.74
NKX3-1Q99801 AL596275.2-206ENST00000641957 626 ntBASIC4.16□□□□□ -1.74
NKX3-1Q99801 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
NKX3-1Q99801 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.16□□□□□ -1.74
NKX3-1Q99801 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.16□□□□□ -1.74
NKX3-1Q99801 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.16□□□□□ -1.74
NKX3-1Q99801 AL359922.3-201ENST00000624779 1670 ntBASIC4.16□□□□□ -1.74
NKX3-1Q99801 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
NKX3-1Q99801 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
NKX3-1Q99801 AC120338.1-201ENST00000625074 1541 ntBASIC4.16□□□□□ -1.74
NKX3-1Q99801 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
NKX3-1Q99801 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC4.15□□□□□ -1.74
NKX3-1Q99801 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.15□□□□□ -1.74
NKX3-1Q99801 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
NKX3-1Q99801 AC104118.1-201ENST00000607625 1589 ntBASIC4.15□□□□□ -1.74
NKX3-1Q99801 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
NKX3-1Q99801 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC4.15□□□□□ -1.75
NKX3-1Q99801 ENSAP3-201ENST00000312710 333 ntBASIC4.15□□□□□ -1.75
NKX3-1Q99801 IGKV7-3-201ENST00000357453 298 ntBASIC4.15□□□□□ -1.75
NKX3-1Q99801 RNU5E-10P-201ENST00000363506 118 ntBASIC4.15□□□□□ -1.75
NKX3-1Q99801 RN7SKP224-201ENST00000364140 325 ntBASIC4.15□□□□□ -1.75
NKX3-1Q99801 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
NKX3-1Q99801 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC4.15□□□□□ -1.75
NKX3-1Q99801 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC4.15□□□□□ -1.75
NKX3-1Q99801 RNU6-225P-201ENST00000384613 103 ntBASIC4.15□□□□□ -1.75
NKX3-1Q99801 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
NKX3-1Q99801 AL080315.1-201ENST00000406055 466 ntBASIC4.15□□□□□ -1.75
NKX3-1Q99801 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC4.15□□□□□ -1.75
NKX3-1Q99801 ZNF736P7Y-201ENST00000425158 820 ntBASIC4.15□□□□□ -1.75
NKX3-1Q99801 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC4.15□□□□□ -1.75
NKX3-1Q99801 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC4.15□□□□□ -1.75
NKX3-1Q99801 RPL7P29-201ENST00000437151 728 ntBASIC4.15□□□□□ -1.75
NKX3-1Q99801 RPS26P30-201ENST00000443431 335 ntBASIC4.15□□□□□ -1.75
NKX3-1Q99801 OR7E125P-201ENST00000443450 846 ntBASIC4.15□□□□□ -1.75
NKX3-1Q99801 AL137845.2-201ENST00000444292 988 ntBASIC4.15□□□□□ -1.75
NKX3-1Q99801 MRPL48P1-201ENST00000445390 636 ntBASIC4.15□□□□□ -1.75
NKX3-1Q99801 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC4.15□□□□□ -1.75
NKX3-1Q99801 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC4.15□□□□□ -1.75
NKX3-1Q99801 AL009048.1-201ENST00000450437 298 ntBASIC4.15□□□□□ -1.75
NKX3-1Q99801 AC022431.1-201ENST00000450941 438 ntBASIC4.15□□□□□ -1.75
NKX3-1Q99801 AL035407.2-201ENST00000454090 378 ntBASIC4.15□□□□□ -1.75
NKX3-1Q99801 RN7SL517P-201ENST00000462240 305 ntBASIC4.15□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 155.2 ms