Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 Z98745.1-201ENST00000402553 494 ntBASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 LINC01881-201ENST00000416103 412 ntBASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 RGS17P1-201ENST00000423358 553 ntBASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 RPEP3-201ENST00000425462 676 ntBASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 TRIM60P13-201ENST00000432350 1283 ntBASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 HMGB3P21-201ENST00000452483 547 ntBASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 AC104763.1-201ENST00000475274 360 ntBASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 AC011037.1-201ENST00000483964 558 ntBASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 SNORD116-26-201ENST00000516006 96 ntBASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 VTA1P2-201ENST00000520205 911 ntBASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 FKBP1BP1-201ENST00000553366 325 ntBASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 MIR4512-201ENST00000583257 77 ntBASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 AL133338.2-201ENST00000604292 736 ntBASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 IGKV2OR2-2-201ENST00000605025 300 ntBASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 AC100814.1-201ENST00000606963 623 ntBASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 AC091979.2-201ENST00000607514 214 ntBASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 SSX9-202ENST00000608568 580 ntTSL 4 BASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 AL121890.3-201ENST00000618494 516 ntBASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 AL162233.1-201ENST00000620014 944 ntBASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 AP006248.2-201ENST00000623309 592 ntBASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 AC011815.3-201ENST00000624194 473 ntBASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 IQCB2P-201ENST00000401788 1633 ntBASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.7□□□□□ -1.66
HDDC3Q8N4P3 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
HDDC3Q8N4P3 ACTR3BP5-201ENST00000448440 1479 ntBASIC4.69□□□□□ -1.66
HDDC3Q8N4P3 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.69□□□□□ -1.66
HDDC3Q8N4P3 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
HDDC3Q8N4P3 AL031119.1-201ENST00000404707 1879 ntBASIC4.69□□□□□ -1.66
HDDC3Q8N4P3 AP001642.1-201ENST00000624727 2117 ntBASIC4.69□□□□□ -1.66
HDDC3Q8N4P3 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
HDDC3Q8N4P3 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
HDDC3Q8N4P3 RNU6-40P-201ENST00000384254 107 ntBASIC4.69□□□□□ -1.66
HDDC3Q8N4P3 RPL31-204ENST00000409038 817 ntTSL 2 BASIC4.69□□□□□ -1.66
HDDC3Q8N4P3 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC4.69□□□□□ -1.66
HDDC3Q8N4P3 MED6P1-201ENST00000439659 713 ntBASIC4.69□□□□□ -1.66
HDDC3Q8N4P3 BTF3P6-201ENST00000448054 499 ntBASIC4.69□□□□□ -1.66
HDDC3Q8N4P3 CYCSP34-201ENST00000458172 304 ntBASIC4.69□□□□□ -1.66
HDDC3Q8N4P3 AC090142.1-201ENST00000465776 462 ntBASIC4.69□□□□□ -1.66
HDDC3Q8N4P3 RPL36AP41-201ENST00000493820 306 ntBASIC4.69□□□□□ -1.66
HDDC3Q8N4P3 SSR3-208ENST00000496050 579 ntTSL 4 BASIC4.69□□□□□ -1.66
HDDC3Q8N4P3 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC4.69□□□□□ -1.66
HDDC3Q8N4P3 MTND4LP2-201ENST00000502312 285 ntBASIC4.69□□□□□ -1.66
HDDC3Q8N4P3 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC4.69□□□□□ -1.66
HDDC3Q8N4P3 CARD16-203ENST00000525374 503 ntTSL 3 BASIC4.69□□□□□ -1.66
HDDC3Q8N4P3 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
HDDC3Q8N4P3 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC4.69□□□□□ -1.66
HDDC3Q8N4P3 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC4.69□□□□□ -1.66
HDDC3Q8N4P3 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC4.69□□□□□ -1.66
HDDC3Q8N4P3 AC011477.5-201ENST00000586571 259 ntBASIC4.69□□□□□ -1.66
HDDC3Q8N4P3 NF1P5-201ENST00000588287 448 ntBASIC4.69□□□□□ -1.66
HDDC3Q8N4P3 SUMO2P14-201ENST00000604488 293 ntBASIC4.69□□□□□ -1.66
HDDC3Q8N4P3 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC4.69□□□□□ -1.66
HDDC3Q8N4P3 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC4.69□□□□□ -1.66
HDDC3Q8N4P3 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
HDDC3Q8N4P3 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
HDDC3Q8N4P3 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
HDDC3Q8N4P3 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
HDDC3Q8N4P3 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC4.69□□□□□ -1.66
HDDC3Q8N4P3 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
HDDC3Q8N4P3 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
HDDC3Q8N4P3 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
HDDC3Q8N4P3 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
HDDC3Q8N4P3 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
HDDC3Q8N4P3 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC4.68□□□□□ -1.66
HDDC3Q8N4P3 AC107068.1-201ENST00000563286 4218 ntBASIC4.68□□□□□ -1.66
HDDC3Q8N4P3 OR4K17-201ENST00000315543 1032 ntBASIC4.68□□□□□ -1.66
HDDC3Q8N4P3 RNA5SP515-201ENST00000364570 118 ntBASIC4.68□□□□□ -1.66
HDDC3Q8N4P3 SNORA70C-201ENST00000384538 135 ntBASIC4.68□□□□□ -1.66
HDDC3Q8N4P3 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
HDDC3Q8N4P3 CCNB2P1-201ENST00000399411 1150 ntBASIC4.68□□□□□ -1.66
HDDC3Q8N4P3 E2F6P2-201ENST00000420708 748 ntBASIC4.68□□□□□ -1.66
HDDC3Q8N4P3 MTND4LP14-201ENST00000429447 288 ntBASIC4.68□□□□□ -1.66
HDDC3Q8N4P3 RPL34P6-201ENST00000432390 345 ntBASIC4.68□□□□□ -1.66
HDDC3Q8N4P3 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC4.68□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 93.9 ms