Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 MIR4716-201ENST00000579628 84 ntBASIC2.46□□□□□ -2.02
LINC00643Q86TS7 AP000919.1-202ENST00000581139 1264 ntBASIC2.46□□□□□ -2.02
LINC00643Q86TS7 AP001521.2-201ENST00000608772 546 ntBASIC2.46□□□□□ -2.02
LINC00643Q86TS7 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
LINC00643Q86TS7 MIR4278-201ENST00000636094 69 ntBASIC2.46□□□□□ -2.02
LINC00643Q86TS7 AC138649.5-201ENST00000637456 137 ntBASIC2.46□□□□□ -2.02
LINC00643Q86TS7 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC2.46□□□□□ -2.02
LINC00643Q86TS7 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
LINC00643Q86TS7 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC2.46□□□□□ -2.02
LINC00643Q86TS7 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC2.46□□□□□ -2.02
LINC00643Q86TS7 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC2.46□□□□□ -2.02
LINC00643Q86TS7 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC2.46□□□□□ -2.02
LINC00643Q86TS7 CASC19-255ENST00000641733 1385 ntBASIC2.46□□□□□ -2.02
LINC00643Q86TS7 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC2.46□□□□□ -2.02
LINC00643Q86TS7 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC2.46□□□□□ -2.02
LINC00643Q86TS7 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC2.46□□□□□ -2.02
LINC00643Q86TS7 CR382285.2-201ENST00000624662 1495 ntBASIC2.45□□□□□ -2.02
LINC00643Q86TS7 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC2.45□□□□□ -2.02
LINC00643Q86TS7 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
LINC00643Q86TS7 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC2.45□□□□□ -2.02
LINC00643Q86TS7 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
LINC00643Q86TS7 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
LINC00643Q86TS7 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
LINC00643Q86TS7 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC2.45□□□□□ -2.02
LINC00643Q86TS7 AC009313.2-201ENST00000417893 1941 ntBASIC2.45□□□□□ -2.02
LINC00643Q86TS7 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC2.45□□□□□ -2.02
LINC00643Q86TS7 RPS3A-201ENST00000274065 934 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
LINC00643Q86TS7 SNORA71.2-201ENST00000364941 134 ntBASIC2.45□□□□□ -2.02
LINC00643Q86TS7 SAMD13-203ENST00000370670 565 ntAPPRIS P1 TSL 4 BASIC2.45□□□□□ -2.02
LINC00643Q86TS7 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC2.45□□□□□ -2.02
LINC00643Q86TS7 HMGB1P13-201ENST00000406019 642 ntBASIC2.45□□□□□ -2.02
LINC00643Q86TS7 TXNDC9-202ENST00000409434 1111 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
LINC00643Q86TS7 RNA5SP31-201ENST00000411144 127 ntBASIC2.45□□□□□ -2.02
LINC00643Q86TS7 HMGB3P23-201ENST00000414981 585 ntBASIC2.45□□□□□ -2.02
LINC00643Q86TS7 AL596448.1-201ENST00000415024 392 ntBASIC2.45□□□□□ -2.02
LINC00643Q86TS7 P2RY10P2-201ENST00000416730 913 ntBASIC2.45□□□□□ -2.02
LINC00643Q86TS7 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC2.45□□□□□ -2.02
LINC00643Q86TS7 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC2.45□□□□□ -2.02
LINC00643Q86TS7 SLC9B1P4-201ENST00000421957 1288 ntBASIC2.45□□□□□ -2.02
LINC00643Q86TS7 GTF2IP23-201ENST00000423746 351 ntBASIC2.45□□□□□ -2.02
LINC00643Q86TS7 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC2.45□□□□□ -2.02
LINC00643Q86TS7 OSTCP5-201ENST00000425293 453 ntBASIC2.45□□□□□ -2.02
LINC00643Q86TS7 AC006989.1-201ENST00000427212 131 ntBASIC2.45□□□□□ -2.02
LINC00643Q86TS7 FGF12-202ENST00000430714 603 ntTSL 2 BASIC2.45□□□□□ -2.02
LINC00643Q86TS7 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC2.45□□□□□ -2.02
LINC00643Q86TS7 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC2.45□□□□□ -2.02
LINC00643Q86TS7 RPL34P20-201ENST00000442771 351 ntBASIC2.45□□□□□ -2.02
LINC00643Q86TS7 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC2.45□□□□□ -2.02
LINC00643Q86TS7 RPL7P59-201ENST00000447700 943 ntBASIC2.45□□□□□ -2.02
LINC00643Q86TS7 NDUFA5P8-201ENST00000449019 346 ntBASIC2.45□□□□□ -2.02
LINC00643Q86TS7 RPS4XP2-201ENST00000458402 793 ntBASIC2.45□□□□□ -2.02
LINC00643Q86TS7 AC092754.2-201ENST00000463506 460 ntBASIC2.45□□□□□ -2.02
LINC00643Q86TS7 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC2.45□□□□□ -2.02
LINC00643Q86TS7 RPS3AP50-201ENST00000487064 803 ntBASIC2.45□□□□□ -2.02
LINC00643Q86TS7 EIF1P7-201ENST00000487533 337 ntBASIC2.45□□□□□ -2.02
LINC00643Q86TS7 TRBV12-2-201ENST00000489763 344 ntBASIC2.45□□□□□ -2.02
LINC00643Q86TS7 RPL7P24-201ENST00000493052 752 ntBASIC2.45□□□□□ -2.02
LINC00643Q86TS7 AC020893.1-201ENST00000502452 580 ntBASIC2.45□□□□□ -2.02
LINC00643Q86TS7 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC2.45□□□□□ -2.02
LINC00643Q86TS7 FABP5P12-201ENST00000515543 389 ntBASIC2.45□□□□□ -2.02
LINC00643Q86TS7 RNU2-58P-201ENST00000516403 183 ntBASIC2.45□□□□□ -2.02
LINC00643Q86TS7 MTCO1P49-201ENST00000523429 802 ntBASIC2.45□□□□□ -2.02
LINC00643Q86TS7 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC2.45□□□□□ -2.02
LINC00643Q86TS7 OR5AP1P-201ENST00000529730 940 ntBASIC2.45□□□□□ -2.02
LINC00643Q86TS7 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
LINC00643Q86TS7 MED21-206ENST00000546323 575 ntTSL 3 BASIC2.45□□□□□ -2.02
LINC00643Q86TS7 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC2.45□□□□□ -2.02
LINC00643Q86TS7 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC2.45□□□□□ -2.02
LINC00643Q86TS7 AP3S2-214ENST00000560940 519 ntTSL 5 BASIC2.45□□□□□ -2.02
LINC00643Q86TS7 AC022968.1-201ENST00000567372 442 ntBASIC2.45□□□□□ -2.02
LINC00643Q86TS7 AC006270.2-201ENST00000578523 652 ntBASIC2.45□□□□□ -2.02
LINC00643Q86TS7 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC2.45□□□□□ -2.02
LINC00643Q86TS7 AC018761.4-201ENST00000585742 272 ntTSL 3 BASIC2.45□□□□□ -2.02
LINC00643Q86TS7 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC2.45□□□□□ -2.02
LINC00643Q86TS7 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC2.45□□□□□ -2.02
LINC00643Q86TS7 AC019176.2-201ENST00000611579 315 ntBASIC2.45□□□□□ -2.02
LINC00643Q86TS7 AL021997.2-201ENST00000615674 271 ntBASIC2.45□□□□□ -2.02
LINC00643Q86TS7 AC005840.5-201ENST00000619166 599 ntBASIC2.45□□□□□ -2.02
LINC00643Q86TS7 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC2.45□□□□□ -2.02
LINC00643Q86TS7 U3.53-201ENST00000628922 216 ntBASIC2.45□□□□□ -2.02
LINC00643Q86TS7 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC2.45□□□□□ -2.02
LINC00643Q86TS7 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
LINC00643Q86TS7 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC2.44□□□□□ -2.02
LINC00643Q86TS7 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.44□□□□□ -2.02
LINC00643Q86TS7 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
LINC00643Q86TS7 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC2.44□□□□□ -2.02
LINC00643Q86TS7 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC2.44□□□□□ -2.02
LINC00643Q86TS7 PAGE4-201ENST00000218068 499 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
LINC00643Q86TS7 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC2.44□□□□□ -2.02
LINC00643Q86TS7 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC2.44□□□□□ -2.02
LINC00643Q86TS7 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC2.44□□□□□ -2.02
LINC00643Q86TS7 RNA5SP46-201ENST00000362370 120 ntBASIC2.44□□□□□ -2.02
LINC00643Q86TS7 SVBP-202ENST00000372522 650 ntAPPRIS P1 TSL 3 BASIC2.44□□□□□ -2.02
LINC00643Q86TS7 PPCS-201ENST00000372556 984 ntTSL 2 BASIC2.44□□□□□ -2.02
LINC00643Q86TS7 MIR124-3-201ENST00000384866 87 ntBASIC2.44□□□□□ -2.02
LINC00643Q86TS7 AL390774.1-201ENST00000411924 246 ntBASIC2.44□□□□□ -2.02
LINC00643Q86TS7 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC2.44□□□□□ -2.02
LINC00643Q86TS7 RPL34P3-201ENST00000421454 338 ntBASIC2.44□□□□□ -2.02
LINC00643Q86TS7 CHIAP3-201ENST00000423668 1133 ntBASIC2.44□□□□□ -2.02
LINC00643Q86TS7 BX890604.2-201ENST00000427883 474 ntBASIC2.44□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 126.5 ms