Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC88AQ3V6T2 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC5.08□□□□□ -1.6
CCDC88AQ3V6T2 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC5.08□□□□□ -1.6
CCDC88AQ3V6T2 AC073346.2-201ENST00000624724 2058 ntBASIC5.08□□□□□ -1.6
CCDC88AQ3V6T2 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC5.08□□□□□ -1.6
CCDC88AQ3V6T2 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC5.08□□□□□ -1.6
CCDC88AQ3V6T2 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
CCDC88AQ3V6T2 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
CCDC88AQ3V6T2 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC88AQ3V6T2 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC5.07□□□□□ -1.6
CCDC88AQ3V6T2 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC5.07□□□□□ -1.6
CCDC88AQ3V6T2 PDSS1P1-201ENST00000422953 1114 ntBASIC5.07□□□□□ -1.6
CCDC88AQ3V6T2 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC5.07□□□□□ -1.6
CCDC88AQ3V6T2 ARL4AP1-201ENST00000503220 705 ntBASIC5.07□□□□□ -1.6
CCDC88AQ3V6T2 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC5.07□□□□□ -1.6
CCDC88AQ3V6T2 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC5.07□□□□□ -1.6
CCDC88AQ3V6T2 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC5.07□□□□□ -1.6
CCDC88AQ3V6T2 AL138721.1-201ENST00000616756 179 ntBASIC5.07□□□□□ -1.6
CCDC88AQ3V6T2 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC5.07□□□□□ -1.6
CCDC88AQ3V6T2 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC88AQ3V6T2 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
CCDC88AQ3V6T2 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC5.07□□□□□ -1.6
CCDC88AQ3V6T2 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC88AQ3V6T2 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC5.07□□□□□ -1.6
CCDC88AQ3V6T2 AC067945.1-201ENST00000342609 618 ntBASIC5.07□□□□□ -1.6
CCDC88AQ3V6T2 OR51B4-201ENST00000380224 933 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
CCDC88AQ3V6T2 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC5.07□□□□□ -1.6
CCDC88AQ3V6T2 AL159987.2-201ENST00000432754 307 ntBASIC5.07□□□□□ -1.6
CCDC88AQ3V6T2 PPIAP3-201ENST00000450588 505 ntBASIC5.07□□□□□ -1.6
CCDC88AQ3V6T2 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC88AQ3V6T2 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC5.07□□□□□ -1.6
CCDC88AQ3V6T2 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC5.07□□□□□ -1.6
CCDC88AQ3V6T2 BTG4P1-201ENST00000510421 183 ntBASIC5.07□□□□□ -1.6
CCDC88AQ3V6T2 PTS-202ENST00000524931 696 ntTSL 3 BASIC5.07□□□□□ -1.6
CCDC88AQ3V6T2 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC5.07□□□□□ -1.6
CCDC88AQ3V6T2 PHBP17-201ENST00000528576 541 ntBASIC5.07□□□□□ -1.6
CCDC88AQ3V6T2 AC008759.1-201ENST00000589783 983 ntBASIC5.07□□□□□ -1.6
CCDC88AQ3V6T2 AL583832.1-201ENST00000603227 784 ntBASIC5.07□□□□□ -1.6
CCDC88AQ3V6T2 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
CCDC88AQ3V6T2 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
CCDC88AQ3V6T2 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC5.06□□□□□ -1.6
CCDC88AQ3V6T2 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC88AQ3V6T2 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC5.06□□□□□ -1.6
CCDC88AQ3V6T2 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
CCDC88AQ3V6T2 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC5.06□□□□□ -1.6
CCDC88AQ3V6T2 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC88AQ3V6T2 RNA5SP97-201ENST00000365006 84 ntBASIC5.06□□□□□ -1.6
CCDC88AQ3V6T2 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC5.06□□□□□ -1.6
CCDC88AQ3V6T2 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC5.06□□□□□ -1.6
CCDC88AQ3V6T2 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC5.06□□□□□ -1.6
CCDC88AQ3V6T2 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC5.06□□□□□ -1.6
CCDC88AQ3V6T2 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC88AQ3V6T2 AL592436.1-201ENST00000605135 558 ntBASIC5.06□□□□□ -1.6
CCDC88AQ3V6T2 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC5.06□□□□□ -1.6
CCDC88AQ3V6T2 AC005086.4-201ENST00000623065 213 ntBASIC5.06□□□□□ -1.6
CCDC88AQ3V6T2 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC5.06□□□□□ -1.6
CCDC88AQ3V6T2 U6.105-201ENST00000637379 88 ntBASIC5.06□□□□□ -1.6
CCDC88AQ3V6T2 GVINP1-202ENST00000531871 7271 ntBASIC5.06□□□□□ -1.6
CCDC88AQ3V6T2 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC5.06□□□□□ -1.6
CCDC88AQ3V6T2 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC5.06□□□□□ -1.6
CCDC88AQ3V6T2 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC5.06□□□□□ -1.6
CCDC88AQ3V6T2 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC5.06□□□□□ -1.6
CCDC88AQ3V6T2 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC5.06□□□□□ -1.6
CCDC88AQ3V6T2 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC88AQ3V6T2 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC88AQ3V6T2 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 CYCSP32-201ENST00000440548 321 ntBASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 AC006011.1-201ENST00000442758 349 ntBASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 AC104574.1-201ENST00000561182 925 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 AC006363.1-201ENST00000603806 463 ntBASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 U3.45-201ENST00000607547 219 ntBASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 AL021997.2-201ENST00000615674 271 ntBASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 MIR7702-201ENST00000621931 59 ntBASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 PAPPA-AS1-201ENST00000445861 2450 ntBASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 SNORA57.3-201ENST00000411095 141 ntBASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 RPS23P10-201ENST00000416185 486 ntBASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 MAP1LC3BP1-201ENST00000417653 379 ntBASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 HSPD1P15-201ENST00000505573 1122 ntBASIC5.05□□□□□ -1.6
CCDC88AQ3V6T2 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 85.3 ms