Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
MSH6P52701 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
MSH6P52701 CREM-220ENST00000463314 964 ntTSL 2 BASIC5.8□□□□□ -1.48
MSH6P52701 RPL7P22-201ENST00000466005 733 ntBASIC5.8□□□□□ -1.48
MSH6P52701 RPL23AP37-201ENST00000479658 549 ntBASIC5.8□□□□□ -1.48
MSH6P52701 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC5.8□□□□□ -1.48
MSH6P52701 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
MSH6P52701 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC5.8□□□□□ -1.48
MSH6P52701 OR7A8P-201ENST00000595427 913 ntBASIC5.8□□□□□ -1.48
MSH6P52701 AC010201.1-201ENST00000605051 540 ntBASIC5.8□□□□□ -1.48
MSH6P52701 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC5.8□□□□□ -1.48
MSH6P52701 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC5.8□□□□□ -1.48
MSH6P52701 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC5.8□□□□□ -1.48
MSH6P52701 FP236240.3-201ENST00000623061 327 ntBASIC5.8□□□□□ -1.48
MSH6P52701 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC5.79□□□□□ -1.48
MSH6P52701 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
MSH6P52701 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
MSH6P52701 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
MSH6P52701 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
MSH6P52701 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC5.79□□□□□ -1.48
MSH6P52701 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
MSH6P52701 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
MSH6P52701 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
MSH6P52701 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC5.79□□□□□ -1.48
MSH6P52701 RNA5SP307-201ENST00000362863 116 ntBASIC5.79□□□□□ -1.48
MSH6P52701 RPL21P17-201ENST00000397467 475 ntBASIC5.79□□□□□ -1.48
MSH6P52701 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC5.79□□□□□ -1.48
MSH6P52701 AMMECR1LP1-201ENST00000415152 841 ntBASIC5.79□□□□□ -1.48
MSH6P52701 BOLA3P4-201ENST00000418151 400 ntBASIC5.79□□□□□ -1.48
MSH6P52701 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC5.79□□□□□ -1.48
MSH6P52701 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC5.79□□□□□ -1.48
MSH6P52701 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC5.79□□□□□ -1.48
MSH6P52701 SERPINA7P1-201ENST00000443077 631 ntBASIC5.79□□□□□ -1.48
MSH6P52701 AL031584.1-201ENST00000447169 754 ntBASIC5.79□□□□□ -1.48
MSH6P52701 RPS4XP12-201ENST00000461747 709 ntBASIC5.79□□□□□ -1.48
MSH6P52701 AL591473.1-201ENST00000464297 313 ntBASIC5.79□□□□□ -1.48
MSH6P52701 RPS29P19-201ENST00000479709 171 ntBASIC5.79□□□□□ -1.48
MSH6P52701 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC5.79□□□□□ -1.48
MSH6P52701 RNA5SP360-201ENST00000516555 118 ntBASIC5.79□□□□□ -1.48
MSH6P52701 CYCSP30-201ENST00000546447 172 ntBASIC5.79□□□□□ -1.48
MSH6P52701 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
MSH6P52701 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC5.79□□□□□ -1.48
MSH6P52701 AC087499.8-201ENST00000578406 226 ntBASIC5.79□□□□□ -1.48
MSH6P52701 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC5.79□□□□□ -1.48
MSH6P52701 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC5.79□□□□□ -1.48
MSH6P52701 AL160290.3-201ENST00000604869 165 ntBASIC5.79□□□□□ -1.48
MSH6P52701 Z98200.1-201ENST00000607298 470 ntBASIC5.79□□□□□ -1.48
MSH6P52701 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC5.79□□□□□ -1.48
MSH6P52701 AC016957.2-201ENST00000616998 848 ntBASIC5.79□□□□□ -1.48
MSH6P52701 AC007546.2-201ENST00000623996 360 ntBASIC5.79□□□□□ -1.48
MSH6P52701 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
MSH6P52701 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
MSH6P52701 AL022322.2-201ENST00000624072 20397 ntBASIC5.78□□□□□ -1.48
MSH6P52701 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
MSH6P52701 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
MSH6P52701 AC107068.1-201ENST00000563286 4218 ntBASIC5.78□□□□□ -1.48
MSH6P52701 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC5.78□□□□□ -1.48
MSH6P52701 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC5.78□□□□□ -1.48
MSH6P52701 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC5.78□□□□□ -1.48
MSH6P52701 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
MSH6P52701 MIR30B-201ENST00000384850 88 ntBASIC5.78□□□□□ -1.48
MSH6P52701 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
MSH6P52701 RN7SKP167-201ENST00000411047 285 ntBASIC5.78□□□□□ -1.48
MSH6P52701 FCF1P7-201ENST00000451185 558 ntBASIC5.78□□□□□ -1.48
MSH6P52701 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
MSH6P52701 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC5.78□□□□□ -1.48
MSH6P52701 AC138938.1-201ENST00000515431 782 ntBASIC5.78□□□□□ -1.48
MSH6P52701 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC5.78□□□□□ -1.48
MSH6P52701 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC5.78□□□□□ -1.48
MSH6P52701 AC005520.3-201ENST00000602874 370 ntBASIC5.78□□□□□ -1.48
MSH6P52701 AC018690.1-201ENST00000608144 626 ntBASIC5.78□□□□□ -1.48
MSH6P52701 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC5.78□□□□□ -1.48
MSH6P52701 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
MSH6P52701 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC5.77□□□□□ -1.48
MSH6P52701 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC5.77□□□□□ -1.49
MSH6P52701 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
MSH6P52701 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
MSH6P52701 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
MSH6P52701 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
MSH6P52701 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC5.77□□□□□ -1.49
MSH6P52701 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
MSH6P52701 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
MSH6P52701 MIR1271-201ENST00000408537 86 ntBASIC5.77□□□□□ -1.49
MSH6P52701 RNU2-65P-201ENST00000410162 185 ntBASIC5.77□□□□□ -1.49
MSH6P52701 SYF2P2-201ENST00000417620 583 ntBASIC5.77□□□□□ -1.49
MSH6P52701 OR5BE1P-201ENST00000425977 939 ntBASIC5.77□□□□□ -1.49
MSH6P52701 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC5.77□□□□□ -1.49
MSH6P52701 CYCSP32-201ENST00000440548 321 ntBASIC5.77□□□□□ -1.49
MSH6P52701 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC5.77□□□□□ -1.49
MSH6P52701 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC5.77□□□□□ -1.49
MSH6P52701 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC5.77□□□□□ -1.49
MSH6P52701 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC5.77□□□□□ -1.49
MSH6P52701 AC005000.2-201ENST00000605468 310 ntBASIC5.77□□□□□ -1.49
MSH6P52701 AC091905.2-201ENST00000623143 306 ntBASIC5.77□□□□□ -1.49
MSH6P52701 OR5BE1P-202ENST00000641168 1176 ntBASIC5.77□□□□□ -1.49
MSH6P52701 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
MSH6P52701 AL133268.1-201ENST00000405676 1401 ntBASIC5.77□□□□□ -1.49
MSH6P52701 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
MSH6P52701 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC5.76□□□□□ -1.49
MSH6P52701 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 74.2 ms