Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 SNORD116-23-201ENST00000384645 92 ntBASIC6.23□□□□□ -1.41
HMGB1P09429 MT-TC-201ENST00000387405 66 ntBASIC6.23□□□□□ -1.41
HMGB1P09429 RNU1-77P-201ENST00000390868 162 ntBASIC6.23□□□□□ -1.41
HMGB1P09429 TANK-206ENST00000406287 875 ntTSL 5 BASIC6.23□□□□□ -1.41
HMGB1P09429 ZSCAN12P1-201ENST00000406489 419 ntBASIC6.23□□□□□ -1.41
HMGB1P09429 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC6.23□□□□□ -1.41
HMGB1P09429 AL513325.1-201ENST00000417716 1034 ntBASIC6.23□□□□□ -1.41
HMGB1P09429 VN1R37P-201ENST00000419096 748 ntBASIC6.23□□□□□ -1.41
HMGB1P09429 OR2B7P-201ENST00000429302 934 ntBASIC6.23□□□□□ -1.41
HMGB1P09429 FAM96AP1-201ENST00000430879 482 ntBASIC6.23□□□□□ -1.41
HMGB1P09429 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC6.23□□□□□ -1.41
HMGB1P09429 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC6.23□□□□□ -1.41
HMGB1P09429 BX842559.2-201ENST00000451418 605 ntBASIC6.23□□□□□ -1.41
HMGB1P09429 PRPF38AP1-201ENST00000451976 933 ntBASIC6.23□□□□□ -1.41
HMGB1P09429 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC6.23□□□□□ -1.41
HMGB1P09429 AC108693.1-201ENST00000496068 432 ntBASIC6.23□□□□□ -1.41
HMGB1P09429 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC6.23□□□□□ -1.41
HMGB1P09429 OR4R3P-201ENST00000525084 838 ntBASIC6.23□□□□□ -1.41
HMGB1P09429 AC019227.1-201ENST00000526902 510 ntBASIC6.23□□□□□ -1.41
HMGB1P09429 LSM6P2-201ENST00000552208 177 ntBASIC6.23□□□□□ -1.41
HMGB1P09429 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC6.23□□□□□ -1.41
HMGB1P09429 AC233280.2-201ENST00000603917 1070 ntBASIC6.23□□□□□ -1.41
HMGB1P09429 AC007390.2-201ENST00000606229 3803 ntBASIC6.23□□□□□ -1.41
HMGB1P09429 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC6.23□□□□□ -1.41
HMGB1P09429 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC6.23□□□□□ -1.41
HMGB1P09429 ZNF663P-202ENST00000641770 1131 ntBASIC6.23□□□□□ -1.41
HMGB1P09429 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC6.23□□□□□ -1.41
HMGB1P09429 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
HMGB1P09429 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
HMGB1P09429 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
HMGB1P09429 AC053481.2-202ENST00000582394 1500 ntBASIC6.23□□□□□ -1.41
HMGB1P09429 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC6.23□□□□□ -1.41
HMGB1P09429 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC6.23□□□□□ -1.41
HMGB1P09429 Z95331.1-201ENST00000623075 23112 ntBASIC6.23□□□□□ -1.41
HMGB1P09429 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC6.23□□□□□ -1.41
HMGB1P09429 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC6.22□□□□□ -1.41
HMGB1P09429 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
HMGB1P09429 AC117529.2-201ENST00000512159 2068 ntBASIC6.22□□□□□ -1.41
HMGB1P09429 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC6.22□□□□□ -1.41
HMGB1P09429 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC6.22□□□□□ -1.41
HMGB1P09429 AC092747.4-201ENST00000620519 1861 ntBASIC6.22□□□□□ -1.41
HMGB1P09429 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC6.22□□□□□ -1.41
HMGB1P09429 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
HMGB1P09429 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC6.22□□□□□ -1.41
HMGB1P09429 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
HMGB1P09429 RNU6-839P-201ENST00000363347 108 ntBASIC6.22□□□□□ -1.41
HMGB1P09429 RNA5SP167-201ENST00000365461 116 ntBASIC6.22□□□□□ -1.41
HMGB1P09429 RNU1-149P-201ENST00000390870 161 ntBASIC6.22□□□□□ -1.41
HMGB1P09429 AC005522.1-201ENST00000395416 346 ntBASIC6.22□□□□□ -1.41
HMGB1P09429 OR3A2-201ENST00000408891 1076 ntBASIC6.22□□□□□ -1.41
HMGB1P09429 RNU4-34P-201ENST00000410431 124 ntBASIC6.22□□□□□ -1.41
HMGB1P09429 RPL31P2-201ENST00000413849 377 ntBASIC6.22□□□□□ -1.41
HMGB1P09429 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC6.22□□□□□ -1.41
HMGB1P09429 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC6.22□□□□□ -1.41
HMGB1P09429 PTGES3P1-201ENST00000439531 483 ntBASIC6.22□□□□□ -1.41
HMGB1P09429 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC6.22□□□□□ -1.41
HMGB1P09429 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC6.22□□□□□ -1.41
HMGB1P09429 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC6.22□□□□□ -1.41
HMGB1P09429 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC6.22□□□□□ -1.41
HMGB1P09429 SNRPGP5-201ENST00000456003 220 ntBASIC6.22□□□□□ -1.41
HMGB1P09429 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC6.22□□□□□ -1.41
HMGB1P09429 CREM-230ENST00000474931 626 ntTSL 2 BASIC6.22□□□□□ -1.41
HMGB1P09429 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC6.22□□□□□ -1.41
HMGB1P09429 HMGB3P13-201ENST00000511263 607 ntBASIC6.22□□□□□ -1.41
HMGB1P09429 RNU6-1028P-201ENST00000517164 93 ntBASIC6.22□□□□□ -1.41
HMGB1P09429 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC6.22□□□□□ -1.41
HMGB1P09429 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC6.22□□□□□ -1.41
HMGB1P09429 MTCO3P15-201ENST00000526563 574 ntBASIC6.22□□□□□ -1.41
HMGB1P09429 RSF1-IT2-201ENST00000529656 566 ntTSL 5 BASIC6.22□□□□□ -1.41
HMGB1P09429 AC092747.2-201ENST00000545069 983 ntBASIC6.22□□□□□ -1.41
HMGB1P09429 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC6.22□□□□□ -1.41
HMGB1P09429 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC6.22□□□□□ -1.41
HMGB1P09429 AC093519.1-201ENST00000566109 298 ntBASIC6.22□□□□□ -1.41
HMGB1P09429 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC6.22□□□□□ -1.41
HMGB1P09429 FAM72A-208ENST00000607379 1139 ntBASIC6.22□□□□□ -1.41
HMGB1P09429 AC079395.2-201ENST00000610982 737 ntBASIC6.22□□□□□ -1.41
HMGB1P09429 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
HMGB1P09429 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC6.22□□□□□ -1.41
HMGB1P09429 MIR6837-201ENST00000620884 64 ntBASIC6.22□□□□□ -1.41
HMGB1P09429 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
HMGB1P09429 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC6.22□□□□□ -1.41
HMGB1P09429 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
HMGB1P09429 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC6.22□□□□□ -1.41
HMGB1P09429 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
HMGB1P09429 OR11H5P-202ENST00000641612 1325 ntBASIC6.22□□□□□ -1.41
HMGB1P09429 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
HMGB1P09429 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
HMGB1P09429 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC6.22□□□□□ -1.41
HMGB1P09429 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC6.22□□□□□ -1.41
HMGB1P09429 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.41
HMGB1P09429 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC6.21□□□□□ -1.41
HMGB1P09429 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC6.21□□□□□ -1.41
HMGB1P09429 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC6.21□□□□□ -1.41
HMGB1P09429 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.41
HMGB1P09429 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.41
HMGB1P09429 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC6.21□□□□□ -1.41
HMGB1P09429 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
HMGB1P09429 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
HMGB1P09429 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC6.21□□□□□ -1.42
HMGB1P09429 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 90.7 ms