Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.26□□□□□ -1.73
HOXD4P09016 AL590240.1-201ENST00000334118 313 ntBASIC4.26□□□□□ -1.73
HOXD4P09016 RN7SKP227-201ENST00000364445 330 ntBASIC4.26□□□□□ -1.73
HOXD4P09016 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
HOXD4P09016 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
HOXD4P09016 SDHCP2-201ENST00000398565 501 ntBASIC4.26□□□□□ -1.73
HOXD4P09016 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
HOXD4P09016 AL591848.1-201ENST00000413092 322 ntBASIC4.26□□□□□ -1.73
HOXD4P09016 AL354692.1-201ENST00000423044 315 ntBASIC4.26□□□□□ -1.73
HOXD4P09016 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC4.26□□□□□ -1.73
HOXD4P09016 OR2B7P-201ENST00000429302 934 ntBASIC4.26□□□□□ -1.73
HOXD4P09016 CYCSP11-201ENST00000436426 315 ntBASIC4.26□□□□□ -1.73
HOXD4P09016 AP000936.3-201ENST00000438127 255 ntBASIC4.26□□□□□ -1.73
HOXD4P09016 AC073052.1-201ENST00000440417 714 ntBASIC4.26□□□□□ -1.73
HOXD4P09016 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC4.26□□□□□ -1.73
HOXD4P09016 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC4.26□□□□□ -1.73
HOXD4P09016 EIF2S2P2-201ENST00000447161 982 ntBASIC4.26□□□□□ -1.73
HOXD4P09016 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC4.26□□□□□ -1.73
HOXD4P09016 CEACAMP6-201ENST00000452007 574 ntBASIC4.26□□□□□ -1.73
HOXD4P09016 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC4.26□□□□□ -1.73
HOXD4P09016 AC108729.2-201ENST00000476543 840 ntBASIC4.26□□□□□ -1.73
HOXD4P09016 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.26□□□□□ -1.73
HOXD4P09016 AC037198.2-201ENST00000478845 733 ntBASIC4.26□□□□□ -1.73
HOXD4P09016 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC4.26□□□□□ -1.73
HOXD4P09016 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
HOXD4P09016 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC4.26□□□□□ -1.73
HOXD4P09016 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC4.26□□□□□ -1.73
HOXD4P09016 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC4.26□□□□□ -1.73
HOXD4P09016 RN7SKP122-201ENST00000515923 296 ntBASIC4.26□□□□□ -1.73
HOXD4P09016 RNU6-709P-201ENST00000517257 104 ntBASIC4.26□□□□□ -1.73
HOXD4P09016 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
HOXD4P09016 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
HOXD4P09016 AC087888.1-201ENST00000550884 1254 ntBASIC4.26□□□□□ -1.73
HOXD4P09016 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC4.26□□□□□ -1.73
HOXD4P09016 AGGF1P9-201ENST00000561884 913 ntBASIC4.26□□□□□ -1.73
HOXD4P09016 AC079148.1-201ENST00000565944 819 ntBASIC4.26□□□□□ -1.73
HOXD4P09016 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC4.26□□□□□ -1.73
HOXD4P09016 RN7SL652P-201ENST00000577769 300 ntBASIC4.26□□□□□ -1.73
HOXD4P09016 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC4.26□□□□□ -1.73
HOXD4P09016 AC015911.5-201ENST00000587076 451 ntBASIC4.26□□□□□ -1.73
HOXD4P09016 AL020997.2-201ENST00000602607 184 ntBASIC4.26□□□□□ -1.73
HOXD4P09016 AP003117.1-201ENST00000602771 554 ntBASIC4.26□□□□□ -1.73
HOXD4P09016 AC020910.2-201ENST00000603635 610 ntBASIC4.26□□□□□ -1.73
HOXD4P09016 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC4.26□□□□□ -1.73
HOXD4P09016 AC005191.1-201ENST00000603950 358 ntBASIC4.26□□□□□ -1.73
HOXD4P09016 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC4.26□□□□□ -1.73
HOXD4P09016 AC034236.3-201ENST00000605999 461 ntBASIC4.26□□□□□ -1.73
HOXD4P09016 AC092653.1-201ENST00000608509 531 ntBASIC4.26□□□□□ -1.73
HOXD4P09016 CR589904.2-201ENST00000612533 440 ntBASIC4.26□□□□□ -1.73
HOXD4P09016 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.26□□□□□ -1.73
HOXD4P09016 AL356274.1-201ENST00000617064 410 ntBASIC4.26□□□□□ -1.73
HOXD4P09016 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
HOXD4P09016 AC022306.3-201ENST00000619930 550 ntBASIC4.26□□□□□ -1.73
HOXD4P09016 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC4.26□□□□□ -1.73
HOXD4P09016 AC005086.4-201ENST00000623065 213 ntBASIC4.26□□□□□ -1.73
HOXD4P09016 AC092159.4-201ENST00000624944 550 ntBASIC4.26□□□□□ -1.73
HOXD4P09016 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC4.26□□□□□ -1.73
HOXD4P09016 MIR6830-201ENST00000636015 70 ntBASIC4.26□□□□□ -1.73
HOXD4P09016 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
HOXD4P09016 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC4.26□□□□□ -1.73
HOXD4P09016 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC4.26□□□□□ -1.73
HOXD4P09016 HSPA8P17-201ENST00000427029 1382 ntBASIC4.26□□□□□ -1.73
HOXD4P09016 AC009501.3-201ENST00000605001 1352 ntBASIC4.26□□□□□ -1.73
HOXD4P09016 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
HOXD4P09016 AL672167.1-203ENST00000641299 2975 ntBASIC4.26□□□□□ -1.73
HOXD4P09016 ANKRD20A10P-201ENST00000457591 1515 ntBASIC4.26□□□□□ -1.73
HOXD4P09016 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.26□□□□□ -1.73
HOXD4P09016 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.26□□□□□ -1.73
HOXD4P09016 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.26□□□□□ -1.73
HOXD4P09016 AC139713.2-214ENST00000642059 1811 ntBASIC4.25□□□□□ -1.73
HOXD4P09016 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.25□□□□□ -1.73
HOXD4P09016 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.25□□□□□ -1.73
HOXD4P09016 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.25□□□□□ -1.73
HOXD4P09016 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
HOXD4P09016 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
HOXD4P09016 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
HOXD4P09016 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
HOXD4P09016 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.25□□□□□ -1.73
HOXD4P09016 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
HOXD4P09016 MIR129-1-201ENST00000384972 72 ntBASIC4.25□□□□□ -1.73
HOXD4P09016 U3.22-201ENST00000391120 215 ntBASIC4.25□□□□□ -1.73
HOXD4P09016 AL592291.1-201ENST00000403830 352 ntBASIC4.25□□□□□ -1.73
HOXD4P09016 MAST4-207ENST00000407621 559 ntTSL 2 BASIC4.25□□□□□ -1.73
HOXD4P09016 ELOCP19-201ENST00000411919 318 ntBASIC4.25□□□□□ -1.73
HOXD4P09016 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC4.25□□□□□ -1.73
HOXD4P09016 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC4.25□□□□□ -1.73
HOXD4P09016 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC4.25□□□□□ -1.73
HOXD4P09016 AC006065.1-201ENST00000422539 802 ntBASIC4.25□□□□□ -1.73
HOXD4P09016 IPMKP1-201ENST00000425988 855 ntBASIC4.25□□□□□ -1.73
HOXD4P09016 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC4.25□□□□□ -1.73
HOXD4P09016 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC4.25□□□□□ -1.73
HOXD4P09016 AC073143.1-201ENST00000436316 395 ntBASIC4.25□□□□□ -1.73
HOXD4P09016 AC007000.2-201ENST00000442564 487 ntBASIC4.25□□□□□ -1.73
HOXD4P09016 MTCYBP21-201ENST00000443300 1113 ntBASIC4.25□□□□□ -1.73
HOXD4P09016 ARL2BPP10-201ENST00000446487 531 ntBASIC4.25□□□□□ -1.73
HOXD4P09016 AC022431.1-201ENST00000450941 438 ntBASIC4.25□□□□□ -1.73
HOXD4P09016 CALM1P2-201ENST00000452941 448 ntBASIC4.25□□□□□ -1.73
HOXD4P09016 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC4.25□□□□□ -1.73
HOXD4P09016 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC4.25□□□□□ -1.73
HOXD4P09016 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC4.25□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 91.2 ms