Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC4.8□□□□□ -1.64
COL4A1P02462 AC104662.1-201ENST00000604448 511 ntBASIC4.8□□□□□ -1.64
COL4A1P02462 AL137849.1-201ENST00000604767 169 ntBASIC4.8□□□□□ -1.64
COL4A1P02462 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
COL4A1P02462 AL356274.2-201ENST00000624379 3752 ntBASIC4.8□□□□□ -1.64
COL4A1P02462 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
COL4A1P02462 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC4.8□□□□□ -1.64
COL4A1P02462 DPCR1-202ENST00000462446 5314 ntAPPRIS P2 TSL 5 BASIC4.8□□□□□ -1.64
COL4A1P02462 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC4.8□□□□□ -1.64
COL4A1P02462 RNA5SP103-201ENST00000459503 118 ntBASIC4.8□□□□□ -1.64
COL4A1P02462 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC4.8□□□□□ -1.64
COL4A1P02462 TBCA-203ENST00000517679 545 ntTSL 3 BASIC4.8□□□□□ -1.64
COL4A1P02462 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC4.8□□□□□ -1.64
COL4A1P02462 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC4.8□□□□□ -1.64
COL4A1P02462 STX3-204ENST00000530221 534 ntTSL 5 BASIC4.8□□□□□ -1.64
COL4A1P02462 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.8□□□□□ -1.64
COL4A1P02462 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC4.8□□□□□ -1.64
COL4A1P02462 AC096577.2-201ENST00000611455 153 ntBASIC4.8□□□□□ -1.64
COL4A1P02462 AC138965.3-201ENST00000623875 498 ntBASIC4.8□□□□□ -1.64
COL4A1P02462 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.79□□□□□ -1.64
COL4A1P02462 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL4A1P02462 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.79□□□□□ -1.64
COL4A1P02462 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL4A1P02462 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC4.79□□□□□ -1.64
COL4A1P02462 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
COL4A1P02462 MAPK10-253ENST00000641010 4072 ntBASIC4.79□□□□□ -1.64
COL4A1P02462 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
COL4A1P02462 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
COL4A1P02462 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL4A1P02462 OR51B4-201ENST00000380224 933 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
COL4A1P02462 MIR490-201ENST00000384865 128 ntBASIC4.79□□□□□ -1.64
COL4A1P02462 MIR199A2-201ENST00000385289 110 ntBASIC4.79□□□□□ -1.64
COL4A1P02462 CRYBB2P1-203ENST00000415709 538 ntBASIC4.79□□□□□ -1.64
COL4A1P02462 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC4.79□□□□□ -1.64
COL4A1P02462 AL050321.1-201ENST00000432363 400 ntBASIC4.79□□□□□ -1.64
COL4A1P02462 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.79□□□□□ -1.64
COL4A1P02462 RANP8-201ENST00000444720 713 ntBASIC4.79□□□□□ -1.64
COL4A1P02462 RPS4XP10-201ENST00000465034 731 ntBASIC4.79□□□□□ -1.64
COL4A1P02462 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC4.79□□□□□ -1.64
COL4A1P02462 MORF4L2P1-201ENST00000503761 858 ntBASIC4.79□□□□□ -1.64
COL4A1P02462 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
COL4A1P02462 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC4.79□□□□□ -1.64
COL4A1P02462 AC124312.6-202ENST00000623624 418 ntBASIC4.79□□□□□ -1.64
COL4A1P02462 AP001273.1-201ENST00000624493 3152 ntBASIC4.79□□□□□ -1.64
COL4A1P02462 ZC3H11A-202ENST00000367210 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL4A1P02462 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
COL4A1P02462 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.78□□□□□ -1.64
COL4A1P02462 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC4.78□□□□□ -1.64
COL4A1P02462 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
COL4A1P02462 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
COL4A1P02462 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL4A1P02462 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL4A1P02462 AL121878.1-201ENST00000418638 859 ntBASIC4.78□□□□□ -1.64
COL4A1P02462 TCEA1P2-201ENST00000420496 906 ntBASIC4.78□□□□□ -1.64
COL4A1P02462 RPL31P61-201ENST00000496160 376 ntBASIC4.78□□□□□ -1.64
COL4A1P02462 RAC1P2-201ENST00000511164 579 ntBASIC4.78□□□□□ -1.64
COL4A1P02462 RN7SKP46-201ENST00000515942 234 ntBASIC4.78□□□□□ -1.64
COL4A1P02462 MIR3944-201ENST00000581277 108 ntBASIC4.78□□□□□ -1.64
COL4A1P02462 AC005344.1-201ENST00000613391 459 ntBASIC4.78□□□□□ -1.64
COL4A1P02462 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC4.78□□□□□ -1.64
COL4A1P02462 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL4A1P02462 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL4A1P02462 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.78□□□□□ -1.64
COL4A1P02462 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL4A1P02462 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
COL4A1P02462 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL4A1P02462 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL4A1P02462 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL4A1P02462 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
COL4A1P02462 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC4.77□□□□□ -1.65
COL4A1P02462 PPIAP3-201ENST00000450588 505 ntBASIC4.77□□□□□ -1.65
COL4A1P02462 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.77□□□□□ -1.65
COL4A1P02462 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC4.77□□□□□ -1.65
COL4A1P02462 RPS26P28-201ENST00000470806 348 ntBASIC4.77□□□□□ -1.65
COL4A1P02462 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.77□□□□□ -1.65
COL4A1P02462 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC4.77□□□□□ -1.65
COL4A1P02462 HMGN1P15-201ENST00000513870 295 ntBASIC4.77□□□□□ -1.65
COL4A1P02462 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC4.77□□□□□ -1.65
COL4A1P02462 AC022695.1-201ENST00000522089 237 ntBASIC4.77□□□□□ -1.65
COL4A1P02462 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC4.77□□□□□ -1.65
COL4A1P02462 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC4.77□□□□□ -1.65
COL4A1P02462 CYCSP30-201ENST00000546447 172 ntBASIC4.77□□□□□ -1.65
COL4A1P02462 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC4.77□□□□□ -1.65
COL4A1P02462 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC4.77□□□□□ -1.65
COL4A1P02462 AC068020.1-201ENST00000594215 661 ntBASIC4.77□□□□□ -1.65
COL4A1P02462 AL773545.4-201ENST00000637262 310 ntBASIC4.77□□□□□ -1.65
COL4A1P02462 AL513478.4-201ENST00000641636 310 ntBASIC4.77□□□□□ -1.65
COL4A1P02462 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
COL4A1P02462 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.77□□□□□ -1.65
COL4A1P02462 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL4A1P02462 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
COL4A1P02462 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL4A1P02462 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
COL4A1P02462 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC4.77□□□□□ -1.65
COL4A1P02462 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
COL4A1P02462 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.77□□□□□ -1.65
COL4A1P02462 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC4.77□□□□□ -1.65
COL4A1P02462 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
COL4A1P02462 GVINP1-202ENST00000531871 7271 ntBASIC4.77□□□□□ -1.65
COL4A1P02462 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 121.6 ms