Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC5.75□□□□□ -1.49
USP47Q96K76 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
USP47Q96K76 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC5.75□□□□□ -1.49
USP47Q96K76 SNORA70.4-201ENST00000365509 134 ntBASIC5.75□□□□□ -1.49
USP47Q96K76 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
USP47Q96K76 AL358232.1-201ENST00000448030 501 ntBASIC5.75□□□□□ -1.49
USP47Q96K76 RPL38P1-201ENST00000460914 211 ntBASIC5.75□□□□□ -1.49
USP47Q96K76 RPL29P14-201ENST00000495837 428 ntBASIC5.75□□□□□ -1.49
USP47Q96K76 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC5.75□□□□□ -1.49
USP47Q96K76 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC5.75□□□□□ -1.49
USP47Q96K76 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC5.75□□□□□ -1.49
USP47Q96K76 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
USP47Q96K76 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC5.75□□□□□ -1.49
USP47Q96K76 RNU4-89P-201ENST00000607443 133 ntBASIC5.75□□□□□ -1.49
USP47Q96K76 AL157762.1-201ENST00000619612 415 ntBASIC5.75□□□□□ -1.49
USP47Q96K76 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC5.75□□□□□ -1.49
USP47Q96K76 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
USP47Q96K76 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
USP47Q96K76 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
USP47Q96K76 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC5.75□□□□□ -1.49
USP47Q96K76 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
USP47Q96K76 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
USP47Q96K76 AC027228.2-201ENST00000567141 2154 ntBASIC5.74□□□□□ -1.49
USP47Q96K76 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
USP47Q96K76 AC108032.1-201ENST00000416706 207 ntBASIC5.74□□□□□ -1.49
USP47Q96K76 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC5.74□□□□□ -1.49
USP47Q96K76 TBCAP1-201ENST00000436520 327 ntBASIC5.74□□□□□ -1.49
USP47Q96K76 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC5.74□□□□□ -1.49
USP47Q96K76 AC006499.6-201ENST00000511169 607 ntBASIC5.74□□□□□ -1.49
USP47Q96K76 AC108064.1-201ENST00000513791 460 ntBASIC5.74□□□□□ -1.49
USP47Q96K76 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC5.74□□□□□ -1.49
USP47Q96K76 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC5.74□□□□□ -1.49
USP47Q96K76 AC079171.1-201ENST00000568788 914 ntBASIC5.74□□□□□ -1.49
USP47Q96K76 RPL23AP87-202ENST00000573039 466 ntBASIC5.74□□□□□ -1.49
USP47Q96K76 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC5.74□□□□□ -1.49
USP47Q96K76 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC5.74□□□□□ -1.49
USP47Q96K76 AL669942.2-201ENST00000620352 697 ntBASIC5.74□□□□□ -1.49
USP47Q96K76 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
USP47Q96K76 RLIMP1-201ENST00000339626 1680 ntBASIC5.74□□□□□ -1.49
USP47Q96K76 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC5.74□□□□□ -1.49
USP47Q96K76 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
USP47Q96K76 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC5.73□□□□□ -1.49
USP47Q96K76 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
USP47Q96K76 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC5.73□□□□□ -1.49
USP47Q96K76 AC090220.1-201ENST00000593078 1699 ntBASIC5.73□□□□□ -1.49
USP47Q96K76 RNA5SP513-201ENST00000364648 118 ntBASIC5.73□□□□□ -1.49
USP47Q96K76 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
USP47Q96K76 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC5.73□□□□□ -1.49
USP47Q96K76 RPL7P2-201ENST00000427639 268 ntBASIC5.73□□□□□ -1.49
USP47Q96K76 RRM2P4-201ENST00000441721 562 ntBASIC5.73□□□□□ -1.49
USP47Q96K76 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC5.73□□□□□ -1.49
USP47Q96K76 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC5.73□□□□□ -1.49
USP47Q96K76 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC5.73□□□□□ -1.49
USP47Q96K76 MARK2P15-201ENST00000432204 2186 ntBASIC5.73□□□□□ -1.49
USP47Q96K76 SAMMSON-213ENST00000641336 1521 ntBASIC5.73□□□□□ -1.49
USP47Q96K76 AL929601.4-201ENST00000613011 1341 ntBASIC5.73□□□□□ -1.49
USP47Q96K76 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC5.73□□□□□ -1.49
USP47Q96K76 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC5.72□□□□□ -1.49
USP47Q96K76 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
USP47Q96K76 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC5.72□□□□□ -1.49
USP47Q96K76 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC5.72□□□□□ -1.49
USP47Q96K76 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC5.72□□□□□ -1.49
USP47Q96K76 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC5.72□□□□□ -1.49
USP47Q96K76 AL139039.2-201ENST00000407436 479 ntBASIC5.72□□□□□ -1.49
USP47Q96K76 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC5.72□□□□□ -1.49
USP47Q96K76 EIF4EP1-201ENST00000422311 642 ntBASIC5.72□□□□□ -1.49
USP47Q96K76 OR5BE1P-201ENST00000425977 939 ntBASIC5.72□□□□□ -1.49
USP47Q96K76 RPS11P1-201ENST00000451072 473 ntBASIC5.72□□□□□ -1.49
USP47Q96K76 FCF1P7-201ENST00000451185 558 ntBASIC5.72□□□□□ -1.49
USP47Q96K76 RPL5P32-201ENST00000454085 879 ntBASIC5.72□□□□□ -1.49
USP47Q96K76 AC091959.2-201ENST00000477363 321 ntBASIC5.72□□□□□ -1.49
USP47Q96K76 AL133372.1-201ENST00000493565 745 ntBASIC5.72□□□□□ -1.49
USP47Q96K76 HPRT1P2-201ENST00000505250 544 ntBASIC5.72□□□□□ -1.49
USP47Q96K76 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC5.72□□□□□ -1.49
USP47Q96K76 OR5M7P-201ENST00000526140 972 ntBASIC5.72□□□□□ -1.49
USP47Q96K76 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC5.72□□□□□ -1.49
USP47Q96K76 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC5.72□□□□□ -1.49
USP47Q96K76 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC5.72□□□□□ -1.49
USP47Q96K76 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC5.72□□□□□ -1.49
USP47Q96K76 MIR6868-201ENST00000611215 58 ntBASIC5.72□□□□□ -1.49
USP47Q96K76 OR5BE1P-202ENST00000641168 1176 ntBASIC5.72□□□□□ -1.49
USP47Q96K76 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
USP47Q96K76 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
USP47Q96K76 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
USP47Q96K76 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
USP47Q96K76 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC5.72□□□□□ -1.49
USP47Q96K76 HSPD1P11-201ENST00000508643 1702 ntBASIC5.72□□□□□ -1.49
USP47Q96K76 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC5.71□□□□□ -1.49
USP47Q96K76 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
USP47Q96K76 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC5.71□□□□□ -1.49
USP47Q96K76 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
USP47Q96K76 ARL4AP4-201ENST00000434170 518 ntBASIC5.71□□□□□ -1.5
USP47Q96K76 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC5.71□□□□□ -1.5
USP47Q96K76 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC5.71□□□□□ -1.5
USP47Q96K76 AL162151.2-201ENST00000448875 158 ntBASIC5.71□□□□□ -1.5
USP47Q96K76 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC5.71□□□□□ -1.5
USP47Q96K76 RN7SL585P-201ENST00000470538 280 ntBASIC5.71□□□□□ -1.5
USP47Q96K76 RPL21P6-201ENST00000479171 504 ntBASIC5.71□□□□□ -1.5
USP47Q96K76 FTH1P21-201ENST00000512179 511 ntBASIC5.71□□□□□ -1.5
USP47Q96K76 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.71□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 152.1 ms