Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 KRR1P1-201ENST00000419430 803 ntBASIC6.71□□□□□ -1.33
CUX1P39880 PRELID3BP10-201ENST00000431957 584 ntBASIC6.71□□□□□ -1.33
CUX1P39880 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
CUX1P39880 PDSS1P2-201ENST00000449397 678 ntBASIC6.71□□□□□ -1.33
CUX1P39880 PPIAP3-201ENST00000450588 505 ntBASIC6.71□□□□□ -1.33
CUX1P39880 CYCSP53-201ENST00000455540 265 ntBASIC6.71□□□□□ -1.33
CUX1P39880 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC6.71□□□□□ -1.33
CUX1P39880 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
CUX1P39880 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC6.71□□□□□ -1.33
CUX1P39880 LSM3P2-201ENST00000551246 273 ntBASIC6.71□□□□□ -1.33
CUX1P39880 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC6.71□□□□□ -1.33
CUX1P39880 AC005972.3-201ENST00000606304 481 ntBASIC6.71□□□□□ -1.33
CUX1P39880 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC6.71□□□□□ -1.33
CUX1P39880 AL442067.2-201ENST00000614033 363 ntBASIC6.71□□□□□ -1.33
CUX1P39880 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC6.71□□□□□ -1.33
CUX1P39880 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
CUX1P39880 EOGT-210ENST00000615922 1931 ntBASIC6.71□□□□□ -1.34
CUX1P39880 GHR-202ENST00000357703 4316 ntTSL 5 BASIC6.71□□□□□ -1.34
CUX1P39880 GHR-213ENST00000622294 4312 ntTSL 5 BASIC6.71□□□□□ -1.34
CUX1P39880 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC6.71□□□□□ -1.34
CUX1P39880 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
CUX1P39880 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
CUX1P39880 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
CUX1P39880 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC6.71□□□□□ -1.34
CUX1P39880 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
CUX1P39880 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
CUX1P39880 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC6.71□□□□□ -1.34
CUX1P39880 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC6.71□□□□□ -1.34
CUX1P39880 Z74696.2-201ENST00000436514 498 ntBASIC6.71□□□□□ -1.34
CUX1P39880 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC6.71□□□□□ -1.34
CUX1P39880 AL591473.1-201ENST00000464297 313 ntBASIC6.71□□□□□ -1.34
CUX1P39880 CDH12P2-201ENST00000504393 298 ntBASIC6.71□□□□□ -1.34
CUX1P39880 PHBP17-201ENST00000528576 541 ntBASIC6.71□□□□□ -1.34
CUX1P39880 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
CUX1P39880 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC6.7□□□□□ -1.34
CUX1P39880 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
CUX1P39880 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC6.7□□□□□ -1.34
CUX1P39880 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC6.7□□□□□ -1.34
CUX1P39880 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC6.7□□□□□ -1.34
CUX1P39880 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
CUX1P39880 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
CUX1P39880 RBMY1KP-201ENST00000423480 476 ntBASIC6.7□□□□□ -1.34
CUX1P39880 RPL7P4-203ENST00000430239 730 ntBASIC6.7□□□□□ -1.34
CUX1P39880 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC6.7□□□□□ -1.34
CUX1P39880 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC6.7□□□□□ -1.34
CUX1P39880 AC104619.4-201ENST00000510773 249 ntBASIC6.7□□□□□ -1.34
CUX1P39880 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC6.7□□□□□ -1.34
CUX1P39880 AC007599.1-201ENST00000568688 1174 ntBASIC6.7□□□□□ -1.34
CUX1P39880 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC6.7□□□□□ -1.34
CUX1P39880 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC6.7□□□□□ -1.34
CUX1P39880 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
CUX1P39880 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC6.7□□□□□ -1.34
CUX1P39880 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC6.7□□□□□ -1.34
CUX1P39880 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC6.7□□□□□ -1.34
CUX1P39880 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC6.7□□□□□ -1.34
CUX1P39880 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
CUX1P39880 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC6.69□□□□□ -1.34
CUX1P39880 ZNF962P-201ENST00000443465 3140 ntBASIC6.69□□□□□ -1.34
CUX1P39880 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC6.69□□□□□ -1.34
CUX1P39880 AC003985.2-201ENST00000562268 1669 ntBASIC6.69□□□□□ -1.34
CUX1P39880 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC6.69□□□□□ -1.34
CUX1P39880 NPM1P37-201ENST00000403105 874 ntBASIC6.69□□□□□ -1.34
CUX1P39880 CYCSP10-201ENST00000417973 294 ntBASIC6.69□□□□□ -1.34
CUX1P39880 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC6.69□□□□□ -1.34
CUX1P39880 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC6.69□□□□□ -1.34
CUX1P39880 PPIAP15-201ENST00000479662 484 ntBASIC6.69□□□□□ -1.34
CUX1P39880 AC108022.1-201ENST00000493466 478 ntBASIC6.69□□□□□ -1.34
CUX1P39880 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC6.69□□□□□ -1.34
CUX1P39880 AC025627.2-201ENST00000576220 160 ntBASIC6.69□□□□□ -1.34
CUX1P39880 EIF4A2P1-201ENST00000587313 1063 ntBASIC6.69□□□□□ -1.34
CUX1P39880 AC016957.2-201ENST00000616998 848 ntBASIC6.69□□□□□ -1.34
CUX1P39880 AC015871.5-202ENST00000623252 701 ntBASIC6.69□□□□□ -1.34
CUX1P39880 LINC02341-201ENST00000637043 824 ntTSL 3 BASIC6.69□□□□□ -1.34
CUX1P39880 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
CUX1P39880 AL672167.1-205ENST00000641112 3080 ntBASIC6.69□□□□□ -1.34
CUX1P39880 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC6.69□□□□□ -1.34
CUX1P39880 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC6.69□□□□□ -1.34
CUX1P39880 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC6.69□□□□□ -1.34
CUX1P39880 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC6.68□□□□□ -1.34
CUX1P39880 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
CUX1P39880 TCEA1P2-201ENST00000420496 906 ntBASIC6.68□□□□□ -1.34
CUX1P39880 AC092647.1-201ENST00000420654 287 ntBASIC6.68□□□□□ -1.34
CUX1P39880 CLYBL-AS2-201ENST00000430125 695 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
CUX1P39880 AL031584.1-201ENST00000447169 754 ntBASIC6.68□□□□□ -1.34
CUX1P39880 AC138938.1-201ENST00000515431 782 ntBASIC6.68□□□□□ -1.34
CUX1P39880 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC6.68□□□□□ -1.34
CUX1P39880 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
CUX1P39880 AC022968.1-201ENST00000567372 442 ntBASIC6.68□□□□□ -1.34
CUX1P39880 RPL23AP87-202ENST00000573039 466 ntBASIC6.68□□□□□ -1.34
CUX1P39880 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC6.68□□□□□ -1.34
CUX1P39880 AP005264.7-201ENST00000625003 745 ntBASIC6.68□□□□□ -1.34
CUX1P39880 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
CUX1P39880 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC6.68□□□□□ -1.34
CUX1P39880 AC073346.2-201ENST00000624724 2058 ntBASIC6.67□□□□□ -1.34
CUX1P39880 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
CUX1P39880 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC6.67□□□□□ -1.34
CUX1P39880 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC6.67□□□□□ -1.34
CUX1P39880 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC6.67□□□□□ -1.34
CUX1P39880 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC6.67□□□□□ -1.34
CUX1P39880 AC115115.1-201ENST00000449927 248 ntBASIC6.67□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms