Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 FAM13A-AS1-202ENST00000511543 2453 ntTSL 2 BASIC6.1□□□□□ -1.43
COL8A1P27658 CDY19P-201ENST00000411668 1613 ntBASIC6.1□□□□□ -1.43
COL8A1P27658 CDY18P-201ENST00000438294 1609 ntBASIC6.1□□□□□ -1.43
COL8A1P27658 ZNF658-206ENST00000621410 4025 ntAPPRIS P1 TSL 2 BASIC6.1□□□□□ -1.43
COL8A1P27658 CU633906.1-201ENST00000621924 2380 ntTSL 3 BASIC6.1□□□□□ -1.43
COL8A1P27658 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL8A1P27658 API5P2-201ENST00000397055 1498 ntBASIC6.1□□□□□ -1.43
COL8A1P27658 BBX-207ENST00000416476 2178 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL8A1P27658 ZNF585A-201ENST00000292841 8618 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL8A1P27658 SAMD3-204ENST00000439090 2093 ntAPPRIS P1 TSL 2 BASIC6.1□□□□□ -1.43
COL8A1P27658 VEGFD-201ENST00000297904 2037 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL8A1P27658 AC012618.3-201ENST00000415793 2042 ntTSL 5 BASIC6.1□□□□□ -1.43
COL8A1P27658 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC6.1□□□□□ -1.43
COL8A1P27658 IQCA1-204ENST00000409907 3281 ntAPPRIS P3 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL8A1P27658 PAK5-201ENST00000353224 4500 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL8A1P27658 OR7D2-201ENST00000344248 3224 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
COL8A1P27658 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL8A1P27658 RNU6-266P-201ENST00000364225 107 ntBASIC6.1□□□□□ -1.43
COL8A1P27658 RN7SKP47-201ENST00000365347 328 ntBASIC6.1□□□□□ -1.43
COL8A1P27658 RNA5SP77-201ENST00000365394 120 ntBASIC6.1□□□□□ -1.43
COL8A1P27658 RNU6-996P-201ENST00000365438 107 ntBASIC6.1□□□□□ -1.43
COL8A1P27658 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL8A1P27658 SOD2P1-201ENST00000396543 562 ntBASIC6.1□□□□□ -1.43
COL8A1P27658 RNU6-193P-201ENST00000410977 107 ntBASIC6.1□□□□□ -1.43
COL8A1P27658 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC6.1□□□□□ -1.43
COL8A1P27658 UQCRBP1-201ENST00000421129 336 ntBASIC6.1□□□□□ -1.43
COL8A1P27658 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC6.1□□□□□ -1.43
COL8A1P27658 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
COL8A1P27658 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC6.1□□□□□ -1.43
COL8A1P27658 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC6.1□□□□□ -1.43
COL8A1P27658 ATP6V1G1P4-201ENST00000438388 335 ntBASIC6.1□□□□□ -1.43
COL8A1P27658 AF228730.2-201ENST00000438784 848 ntBASIC6.1□□□□□ -1.43
COL8A1P27658 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC6.1□□□□□ -1.43
COL8A1P27658 MTCO3P45-201ENST00000443036 613 ntBASIC6.1□□□□□ -1.43
COL8A1P27658 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL8A1P27658 AC104651.2-201ENST00000447549 528 ntBASIC6.1□□□□□ -1.43
COL8A1P27658 AC002553.2-201ENST00000453217 340 ntBASIC6.1□□□□□ -1.43
COL8A1P27658 AC084211.1-201ENST00000473893 328 ntTSL 2 BASIC6.1□□□□□ -1.43
COL8A1P27658 RN7SL177P-201ENST00000476596 299 ntBASIC6.1□□□□□ -1.43
COL8A1P27658 RPL23AP8-201ENST00000479812 475 ntBASIC6.1□□□□□ -1.43
COL8A1P27658 RN7SL413P-201ENST00000482700 297 ntBASIC6.1□□□□□ -1.43
COL8A1P27658 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC6.1□□□□□ -1.43
COL8A1P27658 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC6.1□□□□□ -1.43
COL8A1P27658 CASC21-201ENST00000521586 290 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL8A1P27658 IGLVVI-25-1-201ENST00000521893 249 ntBASIC6.1□□□□□ -1.43
COL8A1P27658 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC6.1□□□□□ -1.43
COL8A1P27658 OR4R1P-201ENST00000529879 463 ntBASIC6.1□□□□□ -1.43
COL8A1P27658 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC6.1□□□□□ -1.43
COL8A1P27658 AC026458.1-201ENST00000564330 438 ntBASIC6.1□□□□□ -1.43
COL8A1P27658 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC6.1□□□□□ -1.43
COL8A1P27658 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC6.1□□□□□ -1.43
COL8A1P27658 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC6.1□□□□□ -1.43
COL8A1P27658 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC6.1□□□□□ -1.43
COL8A1P27658 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC6.1□□□□□ -1.43
COL8A1P27658 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC6.1□□□□□ -1.43
COL8A1P27658 AC008521.2-201ENST00000591021 259 ntBASIC6.1□□□□□ -1.43
COL8A1P27658 AC011445.2-201ENST00000599274 173 ntBASIC6.1□□□□□ -1.43
COL8A1P27658 AC012175.1-201ENST00000603755 531 ntBASIC6.1□□□□□ -1.43
COL8A1P27658 AC011468.4-201ENST00000603942 409 ntBASIC6.1□□□□□ -1.43
COL8A1P27658 AL390037.1-201ENST00000610918 431 ntTSL 3 BASIC6.1□□□□□ -1.43
COL8A1P27658 AL731566.2-201ENST00000618971 317 ntBASIC6.1□□□□□ -1.43
COL8A1P27658 AL049767.1-201ENST00000636811 514 ntTSL 5 BASIC6.1□□□□□ -1.43
COL8A1P27658 LINC01108-201ENST00000427276 3152 ntTSL 2 BASIC6.1□□□□□ -1.43
COL8A1P27658 CPS1-203ENST00000430249 5698 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL8A1P27658 PLP1-220ENST00000612423 3132 ntAPPRIS P1 TSL 2 BASIC6.1□□□□□ -1.43
COL8A1P27658 PARD3-212ENST00000544292 2475 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL8A1P27658 MAPK10-242ENST00000639242 3088 ntAPPRIS P2 TSL 5 BASIC6.1□□□□□ -1.43
COL8A1P27658 PATJ-203ENST00000371158 8505 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
COL8A1P27658 GJA1-201ENST00000282561 3037 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL8A1P27658 CCDC80-201ENST00000206423 12430 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL8A1P27658 FBXL13-201ENST00000313221 2744 ntTSL 2 BASIC6.1□□□□□ -1.43
COL8A1P27658 RNF146-210ENST00000608991 2169 ntAPPRIS P3 TSL 4 BASIC6.1□□□□□ -1.43
COL8A1P27658 RNF213-220ENST00000582970 21055 ntAPPRIS P2 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL8A1P27658 OR5AN1-202ENST00000641850 8468 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
COL8A1P27658 BPIFC-203ENST00000397452 2091 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
COL8A1P27658 NDUFS1-201ENST00000233190 11819 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL8A1P27658 INTS12-211ENST00000618810 1502 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.43
COL8A1P27658 BMX-201ENST00000342014 2499 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL8A1P27658 POF1B-202ENST00000373145 1972 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL8A1P27658 SCN1A-204ENST00000423058 8191 ntAPPRIS ALT1 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL8A1P27658 INTS2-201ENST00000251334 4255 ntAPPRIS P1 TSL 2 BASIC6.09□□□□□ -1.43
COL8A1P27658 THADA-207ENST00000405975 6114 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL8A1P27658 RAG1-201ENST00000299440 6564 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL8A1P27658 FBXW10-201ENST00000301938 3221 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL8A1P27658 IGSF11-201ENST00000354673 3206 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
COL8A1P27658 ZCCHC6-204ENST00000375957 2262 ntTSL 2 BASIC6.09□□□□□ -1.43
COL8A1P27658 PTPRG-AS1-204ENST00000474795 2661 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
COL8A1P27658 SLMAP-202ENST00000295952 4420 ntAPPRIS P1 TSL 2 BASIC6.09□□□□□ -1.43
COL8A1P27658 AC119674.1-204ENST00000641348 1343 ntBASIC6.09□□□□□ -1.43
COL8A1P27658 CDH18-207ENST00000507958 3542 ntAPPRIS P1 TSL 2 BASIC6.09□□□□□ -1.43
COL8A1P27658 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL8A1P27658 RBM41-202ENST00000372487 2579 ntAPPRIS ALT1 TSL 2 BASIC6.09□□□□□ -1.43
COL8A1P27658 MEF2C-217ENST00000510942 3446 ntTSL 5 BASIC6.09□□□□□ -1.43
COL8A1P27658 RPL12P13-201ENST00000310055 497 ntBASIC6.09□□□□□ -1.43
COL8A1P27658 FASLG-201ENST00000340030 917 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
COL8A1P27658 RNU5E-1-201ENST00000362477 120 ntBASIC6.09□□□□□ -1.43
COL8A1P27658 SNORA70G-201ENST00000383923 142 ntBASIC6.09□□□□□ -1.43
COL8A1P27658 RNY1P14-201ENST00000384426 108 ntBASIC6.09□□□□□ -1.43
COL8A1P27658 MIR575-201ENST00000385013 94 ntBASIC6.09□□□□□ -1.43
COL8A1P27658 PRELID1P1-201ENST00000403549 660 ntBASIC6.09□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 71.4 ms