Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.1□□□□□ -1.75
COL6A3P12111 MIR3162-201ENST00000581818 82 ntBASIC4.1□□□□□ -1.75
COL6A3P12111 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC4.1□□□□□ -1.75
COL6A3P12111 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC4.1□□□□□ -1.75
COL6A3P12111 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC4.1□□□□□ -1.75
COL6A3P12111 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC4.1□□□□□ -1.75
COL6A3P12111 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
COL6A3P12111 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
COL6A3P12111 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC4.1□□□□□ -1.75
COL6A3P12111 EIF1P3-201ENST00000423841 334 ntBASIC4.1□□□□□ -1.75
COL6A3P12111 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC4.1□□□□□ -1.75
COL6A3P12111 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.1□□□□□ -1.75
COL6A3P12111 RPL27AP5-201ENST00000469428 449 ntBASIC4.1□□□□□ -1.75
COL6A3P12111 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
COL6A3P12111 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC4.1□□□□□ -1.75
COL6A3P12111 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
COL6A3P12111 AC092747.2-201ENST00000545069 983 ntBASIC4.1□□□□□ -1.75
COL6A3P12111 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC4.1□□□□□ -1.75
COL6A3P12111 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC4.1□□□□□ -1.75
COL6A3P12111 AL360157.1-201ENST00000565962 87 ntBASIC4.1□□□□□ -1.75
COL6A3P12111 AC005034.4-201ENST00000603612 899 ntBASIC4.1□□□□□ -1.75
COL6A3P12111 OR2AS2P-201ENST00000606902 342 ntBASIC4.1□□□□□ -1.75
COL6A3P12111 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC4.1□□□□□ -1.75
COL6A3P12111 MIR7843-201ENST00000622274 79 ntBASIC4.1□□□□□ -1.75
COL6A3P12111 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC4.1□□□□□ -1.75
COL6A3P12111 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC4.09□□□□□ -1.75
COL6A3P12111 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
COL6A3P12111 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
COL6A3P12111 CEACAMP1-201ENST00000434624 1035 ntBASIC4.09□□□□□ -1.75
COL6A3P12111 MIR5004-201ENST00000579078 107 ntBASIC4.09□□□□□ -1.75
COL6A3P12111 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC4.09□□□□□ -1.75
COL6A3P12111 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
COL6A3P12111 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
COL6A3P12111 CACNA1E-210ENST00000621791 16171 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
COL6A3P12111 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
COL6A3P12111 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC4.09□□□□□ -1.75
COL6A3P12111 AL133268.1-201ENST00000405676 1401 ntBASIC4.09□□□□□ -1.75
COL6A3P12111 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC4.09□□□□□ -1.76
COL6A3P12111 Y_RNA.466-201ENST00000384294 113 ntBASIC4.09□□□□□ -1.76
COL6A3P12111 RNA5SP306-201ENST00000411087 107 ntBASIC4.09□□□□□ -1.76
COL6A3P12111 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC4.09□□□□□ -1.76
COL6A3P12111 MIR4524B-201ENST00000581569 115 ntBASIC4.09□□□□□ -1.76
COL6A3P12111 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC4.09□□□□□ -1.76
COL6A3P12111 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC4.09□□□□□ -1.76
COL6A3P12111 OR8G7P-201ENST00000616658 848 ntBASIC4.09□□□□□ -1.76
COL6A3P12111 AF001550.2-201ENST00000636643 217 ntBASIC4.09□□□□□ -1.76
COL6A3P12111 AL392088.2-201ENST00000637607 285 ntBASIC4.09□□□□□ -1.76
COL6A3P12111 SLC35A3-207ENST00000533028 14759 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
COL6A3P12111 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.76
COL6A3P12111 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC4.09□□□□□ -1.76
COL6A3P12111 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.76
COL6A3P12111 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC4.09□□□□□ -1.76
COL6A3P12111 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.09□□□□□ -1.76
COL6A3P12111 ZNF566-204ENST00000434377 5197 ntAPPRIS P3 TSL 2 BASIC4.09□□□□□ -1.76
COL6A3P12111 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC4.08□□□□□ -1.76
COL6A3P12111 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC4.08□□□□□ -1.76
COL6A3P12111 PRPF19P1-201ENST00000584766 898 ntBASIC4.08□□□□□ -1.76
COL6A3P12111 Z95327.3-201ENST00000610385 572 ntBASIC4.08□□□□□ -1.76
COL6A3P12111 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC4.08□□□□□ -1.76
COL6A3P12111 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
COL6A3P12111 BIRC6-201ENST00000421745 15703 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
COL6A3P12111 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
COL6A3P12111 FTX-215ENST00000638681 9771 ntTSL 5 BASIC4.08□□□□□ -1.76
COL6A3P12111 BUB3-203ENST00000368865 7828 ntAPPRIS P3 TSL 1 (best) BASIC4.08□□□□□ -1.76
COL6A3P12111 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.08□□□□□ -1.76
COL6A3P12111 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
COL6A3P12111 SNORA5B-201ENST00000363786 132 ntBASIC4.08□□□□□ -1.76
COL6A3P12111 HMGB3P19-201ENST00000403971 560 ntBASIC4.08□□□□□ -1.76
COL6A3P12111 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC4.08□□□□□ -1.76
COL6A3P12111 AP001207.2-201ENST00000519490 539 ntBASIC4.08□□□□□ -1.76
COL6A3P12111 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.08□□□□□ -1.76
COL6A3P12111 LARP7P3-201ENST00000579888 337 ntBASIC4.08□□□□□ -1.76
COL6A3P12111 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC4.08□□□□□ -1.76
COL6A3P12111 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC4.08□□□□□ -1.76
COL6A3P12111 AC009159.1-201ENST00000618386 642 ntBASIC4.08□□□□□ -1.76
COL6A3P12111 AL590240.3-201ENST00000621416 943 ntBASIC4.08□□□□□ -1.76
COL6A3P12111 AC119674.1-207ENST00000641355 633 ntBASIC4.08□□□□□ -1.76
COL6A3P12111 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC4.08□□□□□ -1.76
COL6A3P12111 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
COL6A3P12111 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC4.08□□□□□ -1.76
COL6A3P12111 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
COL6A3P12111 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
COL6A3P12111 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC4.08□□□□□ -1.76
COL6A3P12111 HNRNPA1P54-201ENST00000411857 9714 ntBASIC4.08□□□□□ -1.76
COL6A3P12111 HYDIN-206ENST00000393567 15719 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
COL6A3P12111 OR2G6-203ENST00000641804 6084 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
COL6A3P12111 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.08□□□□□ -1.76
COL6A3P12111 SOD2P1-201ENST00000396543 562 ntBASIC4.08□□□□□ -1.76
COL6A3P12111 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC4.08□□□□□ -1.76
COL6A3P12111 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
COL6A3P12111 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC4.08□□□□□ -1.76
COL6A3P12111 RANP9-201ENST00000519957 271 ntBASIC4.08□□□□□ -1.76
COL6A3P12111 MTND1P6-201ENST00000523621 946 ntBASIC4.08□□□□□ -1.76
COL6A3P12111 ATP5F1P5-201ENST00000526403 760 ntBASIC4.08□□□□□ -1.76
COL6A3P12111 MIR5186-201ENST00000577504 120 ntBASIC4.08□□□□□ -1.76
COL6A3P12111 MIR432-201ENST00000606207 94 ntBASIC4.08□□□□□ -1.76
COL6A3P12111 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
COL6A3P12111 AC026367.3-201ENST00000619032 590 ntBASIC4.08□□□□□ -1.76
COL6A3P12111 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
COL6A3P12111 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 103.6 ms