Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 THAP12P5-201ENST00000405864 2275 ntBASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 SAGE4P-201ENST00000442271 3381 ntBASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 RPL23AP59-201ENST00000399415 461 ntBASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 MIR937-201ENST00000401271 86 ntBASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 AC013429.2-201ENST00000418798 781 ntBASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 AC104837.2-201ENST00000427236 424 ntBASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 AC092162.1-201ENST00000432828 434 ntBASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 RPL35AP21-201ENST00000437667 333 ntBASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 H2AFZP5-201ENST00000446960 382 ntBASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 AC091685.2-201ENST00000454924 864 ntBASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 RPS5P7-201ENST00000456664 608 ntBASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 MYL12BP2-201ENST00000503948 512 ntBASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 RPL7L1P13-201ENST00000511702 739 ntBASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 BTF3P13-201ENST00000513224 490 ntBASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 AC110775.1-201ENST00000513721 462 ntBASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 BUD31P1-201ENST00000521828 359 ntBASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 OSBPL9P3-201ENST00000534523 595 ntBASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 AGGF1P9-201ENST00000561884 913 ntBASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 MIR4436B2-201ENST00000581415 91 ntBASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 MIR4436B1-201ENST00000583272 91 ntBASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 AC020910.3-201ENST00000603701 874 ntBASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 AL391358.1-201ENST00000605342 190 ntBASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 AC010424.2-201ENST00000607594 443 ntBASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 AP000542.2-201ENST00000623199 6179 ntBASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
CHMP4AQ9BY43 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
CHMP4AQ9BY43 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
CHMP4AQ9BY43 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC6.31□□□□□ -1.4
CHMP4AQ9BY43 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
CHMP4AQ9BY43 ENSAP3-201ENST00000312710 333 ntBASIC6.31□□□□□ -1.4
CHMP4AQ9BY43 RNU6-1339P-201ENST00000363574 91 ntBASIC6.31□□□□□ -1.4
CHMP4AQ9BY43 RN7SKP103-201ENST00000363848 320 ntBASIC6.31□□□□□ -1.4
CHMP4AQ9BY43 RNU6-356P-201ENST00000384140 107 ntBASIC6.31□□□□□ -1.4
CHMP4AQ9BY43 MIR124-3-201ENST00000384866 87 ntBASIC6.31□□□□□ -1.4
CHMP4AQ9BY43 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
CHMP4AQ9BY43 AL080315.1-201ENST00000406055 466 ntBASIC6.31□□□□□ -1.4
CHMP4AQ9BY43 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC6.31□□□□□ -1.4
CHMP4AQ9BY43 NUP35P2-201ENST00000416748 943 ntBASIC6.31□□□□□ -1.4
CHMP4AQ9BY43 AC023128.2-201ENST00000420880 1223 ntBASIC6.31□□□□□ -1.4
CHMP4AQ9BY43 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC6.31□□□□□ -1.4
CHMP4AQ9BY43 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC6.31□□□□□ -1.4
CHMP4AQ9BY43 AL691482.1-201ENST00000453255 87 ntBASIC6.31□□□□□ -1.4
CHMP4AQ9BY43 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC6.31□□□□□ -1.4
CHMP4AQ9BY43 AC108729.2-201ENST00000476543 840 ntBASIC6.31□□□□□ -1.4
CHMP4AQ9BY43 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC6.31□□□□□ -1.4
CHMP4AQ9BY43 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC6.31□□□□□ -1.4
CHMP4AQ9BY43 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC6.31□□□□□ -1.4
CHMP4AQ9BY43 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC6.31□□□□□ -1.4
CHMP4AQ9BY43 MAL2-205ENST00000521048 575 ntTSL 4 BASIC6.31□□□□□ -1.4
CHMP4AQ9BY43 AC083923.1-201ENST00000523708 376 ntBASIC6.31□□□□□ -1.4
CHMP4AQ9BY43 GCSHP4-201ENST00000538792 439 ntBASIC6.31□□□□□ -1.4
CHMP4AQ9BY43 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC6.31□□□□□ -1.4
CHMP4AQ9BY43 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC6.31□□□□□ -1.4
CHMP4AQ9BY43 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC6.31□□□□□ -1.4
CHMP4AQ9BY43 ATP5F1P7-201ENST00000567330 760 ntBASIC6.31□□□□□ -1.4
CHMP4AQ9BY43 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC6.31□□□□□ -1.4
CHMP4AQ9BY43 AC024940.4-201ENST00000605507 246 ntBASIC6.31□□□□□ -1.4
CHMP4AQ9BY43 AC087385.3-201ENST00000620477 187 ntBASIC6.31□□□□□ -1.4
CHMP4AQ9BY43 MIR4496-201ENST00000635896 61 ntBASIC6.31□□□□□ -1.4
CHMP4AQ9BY43 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
CHMP4AQ9BY43 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
CHMP4AQ9BY43 ZFRP1-201ENST00000457579 2970 ntBASIC6.31□□□□□ -1.4
CHMP4AQ9BY43 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC6.31□□□□□ -1.4
CHMP4AQ9BY43 SALL4P2-201ENST00000423288 2910 ntBASIC6.31□□□□□ -1.4
CHMP4AQ9BY43 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC6.31□□□□□ -1.4
CHMP4AQ9BY43 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
CHMP4AQ9BY43 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
CHMP4AQ9BY43 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
CHMP4AQ9BY43 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
CHMP4AQ9BY43 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC6.3□□□□□ -1.4
CHMP4AQ9BY43 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
CHMP4AQ9BY43 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
CHMP4AQ9BY43 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
CHMP4AQ9BY43 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
CHMP4AQ9BY43 RNA5SP239-201ENST00000410218 129 ntBASIC6.3□□□□□ -1.4
CHMP4AQ9BY43 RNA5SP345-201ENST00000410646 108 ntBASIC6.3□□□□□ -1.4
CHMP4AQ9BY43 OR1H1P-201ENST00000448731 937 ntBASIC6.3□□□□□ -1.4
CHMP4AQ9BY43 HCG17-214ENST00000453558 732 ntTSL 5 BASIC6.3□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 92.2 ms