Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.86□□□□□ -1.95
PRKDCP78527 RNA5SP179-201ENST00000517284 121 ntBASIC2.86□□□□□ -1.95
PRKDCP78527 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC2.86□□□□□ -1.95
PRKDCP78527 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
PRKDCP78527 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
PRKDCP78527 ZBTB8B-201ENST00000609129 12834 ntAPPRIS P1 TSL 5 BASIC2.86□□□□□ -1.95
PRKDCP78527 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
PRKDCP78527 ATF6-201ENST00000367942 7496 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
PRKDCP78527 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC2.86□□□□□ -1.95
PRKDCP78527 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
PRKDCP78527 PROX1-202ENST00000366958 8240 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
PRKDCP78527 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
PRKDCP78527 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
PRKDCP78527 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC2.86□□□□□ -1.95
PRKDCP78527 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC2.86□□□□□ -1.95
PRKDCP78527 RN7SL504P-201ENST00000494496 287 ntBASIC2.86□□□□□ -1.95
PRKDCP78527 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC2.86□□□□□ -1.95
PRKDCP78527 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC2.86□□□□□ -1.95
PRKDCP78527 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC2.86□□□□□ -1.95
PRKDCP78527 AP004289.2-201ENST00000444413 1457 ntBASIC2.86□□□□□ -1.95
PRKDCP78527 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC2.86□□□□□ -1.95
PRKDCP78527 MAPK10-303ENST00000641324 3959 ntBASIC2.86□□□□□ -1.95
PRKDCP78527 AC007390.2-201ENST00000606229 3803 ntBASIC2.86□□□□□ -1.95
PRKDCP78527 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
PRKDCP78527 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC2.86□□□□□ -1.95
PRKDCP78527 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC2.86□□□□□ -1.95
PRKDCP78527 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC2.86□□□□□ -1.95
PRKDCP78527 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC2.86□□□□□ -1.95
PRKDCP78527 MTND6P32-201ENST00000457611 483 ntBASIC2.86□□□□□ -1.95
PRKDCP78527 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC2.86□□□□□ -1.95
PRKDCP78527 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC2.86□□□□□ -1.95
PRKDCP78527 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC2.86□□□□□ -1.95
PRKDCP78527 NAV2-216ENST00000540292 11003 ntAPPRIS ALT1 TSL 5 BASIC2.86□□□□□ -1.95
PRKDCP78527 ATP5S-202ENST00000311459 10212 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
PRKDCP78527 CACNA1E-210ENST00000621791 16171 ntAPPRIS ALT2 TSL 1 (best) BASIC2.86□□□□□ -1.95
PRKDCP78527 SCN8A-203ENST00000545061 11433 ntTSL 5 BASIC2.85□□□□□ -1.95
PRKDCP78527 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
PRKDCP78527 SH3D19-210ENST00000514152 5107 ntAPPRIS ALT1 TSL 2 BASIC2.85□□□□□ -1.95
PRKDCP78527 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC2.85□□□□□ -1.95
PRKDCP78527 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC2.85□□□□□ -1.95
PRKDCP78527 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
PRKDCP78527 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
PRKDCP78527 AC058791.1-201ENST00000608412 3198 ntBASIC2.85□□□□□ -1.95
PRKDCP78527 TAF1-203ENST00000373790 7629 ntAPPRIS ALT2 TSL 1 (best) BASIC2.85□□□□□ -1.95
PRKDCP78527 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC2.85□□□□□ -1.95
PRKDCP78527 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC2.85□□□□□ -1.95
PRKDCP78527 FAM227A-205ENST00000535113 10322 ntAPPRIS ALT2 TSL 5 BASIC2.85□□□□□ -1.95
PRKDCP78527 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
PRKDCP78527 AC079809.1-201ENST00000415468 276 ntBASIC2.85□□□□□ -1.95
PRKDCP78527 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC2.85□□□□□ -1.95
PRKDCP78527 RPL27AP5-201ENST00000469428 449 ntBASIC2.85□□□□□ -1.95
PRKDCP78527 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC2.85□□□□□ -1.95
PRKDCP78527 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC2.85□□□□□ -1.95
PRKDCP78527 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC2.85□□□□□ -1.95
PRKDCP78527 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
PRKDCP78527 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
PRKDCP78527 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
PRKDCP78527 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC2.85□□□□□ -1.95
PRKDCP78527 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
PRKDCP78527 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
PRKDCP78527 AC139426.3-201ENST00000605648 2059 ntBASIC2.85□□□□□ -1.95
PRKDCP78527 KIDINS220-206ENST00000473731 7248 ntTSL 5 BASIC2.85□□□□□ -1.95
PRKDCP78527 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC2.85□□□□□ -1.95
PRKDCP78527 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC2.85□□□□□ -1.95
PRKDCP78527 RPL23AP46-201ENST00000438548 490 ntBASIC2.85□□□□□ -1.95
PRKDCP78527 AC006011.1-201ENST00000442758 349 ntBASIC2.85□□□□□ -1.95
PRKDCP78527 RPL23AP12-201ENST00000467573 473 ntBASIC2.85□□□□□ -1.95
PRKDCP78527 S100A11P2-201ENST00000467589 312 ntBASIC2.85□□□□□ -1.95
PRKDCP78527 AC091516.1-201ENST00000549191 703 ntBASIC2.85□□□□□ -1.95
PRKDCP78527 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC2.85□□□□□ -1.95
PRKDCP78527 AL121576.1-201ENST00000556055 276 ntBASIC2.85□□□□□ -1.95
PRKDCP78527 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
PRKDCP78527 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC2.85□□□□□ -1.95
PRKDCP78527 ABLIM1-214ENST00000533213 7606 ntTSL 5 BASIC2.85□□□□□ -1.95
PRKDCP78527 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC2.85□□□□□ -1.95
PRKDCP78527 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC2.85□□□□□ -1.95
PRKDCP78527 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
PRKDCP78527 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC2.85□□□□□ -1.95
PRKDCP78527 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC2.85□□□□□ -1.95
PRKDCP78527 HNRNPA1P54-201ENST00000411857 9714 ntBASIC2.85□□□□□ -1.95
PRKDCP78527 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC2.85□□□□□ -1.95
PRKDCP78527 RPL36AP13-201ENST00000457490 317 ntBASIC2.85□□□□□ -1.95
PRKDCP78527 AP001992.1-205ENST00000462248 379 ntBASIC2.85□□□□□ -1.95
PRKDCP78527 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC2.85□□□□□ -1.95
PRKDCP78527 AC133552.5-201ENST00000604266 540 ntBASIC2.85□□□□□ -1.95
PRKDCP78527 AC008833.1-201ENST00000611633 691 ntBASIC2.85□□□□□ -1.95
PRKDCP78527 FRG1EP-201ENST00000634469 770 ntBASIC2.85□□□□□ -1.95
PRKDCP78527 CNTRL-207ENST00000373855 7660 ntAPPRIS P1 TSL 5 BASIC2.85□□□□□ -1.95
PRKDCP78527 SPAG6-209ENST00000538630 2376 ntTSL 5 BASIC2.85□□□□□ -1.95
PRKDCP78527 ZBTB25-204ENST00000608382 10372 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
PRKDCP78527 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
PRKDCP78527 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC2.85□□□□□ -1.95
PRKDCP78527 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
PRKDCP78527 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC2.84□□□□□ -1.95
PRKDCP78527 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC2.84□□□□□ -1.95
PRKDCP78527 MIR1179-201ENST00000408703 91 ntBASIC2.84□□□□□ -1.95
PRKDCP78527 AL121890.1-201ENST00000435457 205 ntBASIC2.84□□□□□ -1.95
PRKDCP78527 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC2.84□□□□□ -1.95
PRKDCP78527 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC2.84□□□□□ -1.95
PRKDCP78527 FCF1P7-201ENST00000451185 558 ntBASIC2.84□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 87.5 ms