Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC4.21□□□□□ -1.74
NKX3-1Q99801 AC004453.1-201ENST00000487895 408 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 AC109462.1-201ENST00000491087 368 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 TPT1P3-201ENST00000492841 512 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 RPS4XP18-201ENST00000495480 763 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 GTF2IP9-201ENST00000502460 301 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC4.21□□□□□ -1.74
NKX3-1Q99801 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC4.21□□□□□ -1.74
NKX3-1Q99801 HPRT1P1-201ENST00000509498 657 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 RNA5SP392-201ENST00000516905 112 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 AC118942.1-201ENST00000529674 1035 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC4.21□□□□□ -1.74
NKX3-1Q99801 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC4.21□□□□□ -1.74
NKX3-1Q99801 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC4.21□□□□□ -1.74
NKX3-1Q99801 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC4.21□□□□□ -1.74
NKX3-1Q99801 SULT1C2P2-201ENST00000562517 294 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 AC093249.4-201ENST00000564755 259 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC4.21□□□□□ -1.74
NKX3-1Q99801 AL606834.3-201ENST00000602615 496 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 AC087763.1-201ENST00000603391 286 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 IGKV2OR2-2-201ENST00000605025 300 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 AC090912.3-201ENST00000609775 533 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC4.21□□□□□ -1.74
NKX3-1Q99801 AL049794.2-201ENST00000616301 365 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
NKX3-1Q99801 AC073569.3-201ENST00000619055 682 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 AL669942.2-201ENST00000620352 697 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 AC019206.1-201ENST00000621938 425 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 AC023510.2-201ENST00000622162 746 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC4.21□□□□□ -1.74
NKX3-1Q99801 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC4.21□□□□□ -1.74
NKX3-1Q99801 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
NKX3-1Q99801 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
NKX3-1Q99801 CASC19-284ENST00000642142 1868 ntBASIC4.21□□□□□ -1.74
NKX3-1Q99801 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
NKX3-1Q99801 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
NKX3-1Q99801 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
NKX3-1Q99801 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
NKX3-1Q99801 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
NKX3-1Q99801 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC4.2□□□□□ -1.74
NKX3-1Q99801 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.2□□□□□ -1.74
NKX3-1Q99801 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
NKX3-1Q99801 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.2□□□□□ -1.74
NKX3-1Q99801 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
NKX3-1Q99801 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
NKX3-1Q99801 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
NKX3-1Q99801 AC234772.1-201ENST00000377927 937 ntBASIC4.2□□□□□ -1.74
NKX3-1Q99801 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
NKX3-1Q99801 SNORA68.2-201ENST00000391263 128 ntBASIC4.2□□□□□ -1.74
NKX3-1Q99801 DNAJA1P4-201ENST00000406473 1166 ntBASIC4.2□□□□□ -1.74
NKX3-1Q99801 MTATP6P31-201ENST00000406985 692 ntBASIC4.2□□□□□ -1.74
NKX3-1Q99801 RN7SKP125-201ENST00000410481 302 ntBASIC4.2□□□□□ -1.74
NKX3-1Q99801 UBE2V1P11-201ENST00000411559 285 ntBASIC4.2□□□□□ -1.74
NKX3-1Q99801 VTA1P1-201ENST00000414044 866 ntBASIC4.2□□□□□ -1.74
NKX3-1Q99801 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC4.2□□□□□ -1.74
NKX3-1Q99801 EIF4A1P1-201ENST00000420241 934 ntBASIC4.2□□□□□ -1.74
NKX3-1Q99801 AC073310.1-201ENST00000423226 1033 ntBASIC4.2□□□□□ -1.74
NKX3-1Q99801 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC4.2□□□□□ -1.74
NKX3-1Q99801 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC4.2□□□□□ -1.74
NKX3-1Q99801 AC092162.1-201ENST00000432828 434 ntBASIC4.2□□□□□ -1.74
NKX3-1Q99801 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC4.2□□□□□ -1.74
NKX3-1Q99801 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC4.2□□□□□ -1.74
NKX3-1Q99801 RPL12P3-201ENST00000440080 396 ntBASIC4.2□□□□□ -1.74
NKX3-1Q99801 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC4.2□□□□□ -1.74
NKX3-1Q99801 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC4.2□□□□□ -1.74
NKX3-1Q99801 AL354714.3-201ENST00000447284 493 ntBASIC4.2□□□□□ -1.74
NKX3-1Q99801 AC073850.1-201ENST00000449243 255 ntBASIC4.2□□□□□ -1.74
NKX3-1Q99801 AC008280.2-201ENST00000455473 307 ntBASIC4.2□□□□□ -1.74
NKX3-1Q99801 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC4.2□□□□□ -1.74
NKX3-1Q99801 AC104164.3-201ENST00000467363 1258 ntBASIC4.2□□□□□ -1.74
NKX3-1Q99801 RN7SL826P-201ENST00000479724 288 ntBASIC4.2□□□□□ -1.74
NKX3-1Q99801 RN7SL809P-201ENST00000482040 297 ntBASIC4.2□□□□□ -1.74
NKX3-1Q99801 AC008427.1-201ENST00000503102 655 ntBASIC4.2□□□□□ -1.74
NKX3-1Q99801 SNRPCP2-201ENST00000504370 475 ntBASIC4.2□□□□□ -1.74
NKX3-1Q99801 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC4.2□□□□□ -1.74
NKX3-1Q99801 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
NKX3-1Q99801 AC138938.1-201ENST00000515431 782 ntBASIC4.2□□□□□ -1.74
NKX3-1Q99801 RNA5SP43-201ENST00000516559 110 ntBASIC4.2□□□□□ -1.74
NKX3-1Q99801 IGKV2D-10-201ENST00000520194 281 ntBASIC4.2□□□□□ -1.74
NKX3-1Q99801 AC092490.3-201ENST00000545370 572 ntBASIC4.2□□□□□ -1.74
NKX3-1Q99801 AC025260.1-201ENST00000548858 430 ntBASIC4.2□□□□□ -1.74
NKX3-1Q99801 AL049839.1-201ENST00000556151 657 ntBASIC4.2□□□□□ -1.74
NKX3-1Q99801 AL121594.4-201ENST00000556211 1196 ntBASIC4.2□□□□□ -1.74
NKX3-1Q99801 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC4.2□□□□□ -1.74
NKX3-1Q99801 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC4.2□□□□□ -1.74
NKX3-1Q99801 AC010735.1-201ENST00000567305 1026 ntBASIC4.2□□□□□ -1.74
NKX3-1Q99801 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC4.2□□□□□ -1.74
NKX3-1Q99801 AC006116.3-201ENST00000592968 361 ntBASIC4.2□□□□□ -1.74
NKX3-1Q99801 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC4.2□□□□□ -1.74
NKX3-1Q99801 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC4.2□□□□□ -1.74
NKX3-1Q99801 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC4.2□□□□□ -1.74
NKX3-1Q99801 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC4.2□□□□□ -1.74
NKX3-1Q99801 AC018754.1-201ENST00000607486 925 ntBASIC4.2□□□□□ -1.74
NKX3-1Q99801 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC4.2□□□□□ -1.74
NKX3-1Q99801 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC4.2□□□□□ -1.74
NKX3-1Q99801 AC055764.2-201ENST00000610089 670 ntBASIC4.2□□□□□ -1.74
NKX3-1Q99801 AC012414.7-202ENST00000622705 1090 ntBASIC4.2□□□□□ -1.74
NKX3-1Q99801 AC099494.2-201ENST00000623371 978 ntBASIC4.2□□□□□ -1.74
NKX3-1Q99801 AP003497.2-201ENST00000624220 967 ntBASIC4.2□□□□□ -1.74
NKX3-1Q99801 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 113.9 ms