Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 OR4U1P-201ENST00000554958 912 ntBASIC4.61□□□□□ -1.67
VPS39Q96JC1 RN7SL652P-201ENST00000577769 300 ntBASIC4.61□□□□□ -1.67
VPS39Q96JC1 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC4.61□□□□□ -1.67
VPS39Q96JC1 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC4.61□□□□□ -1.67
VPS39Q96JC1 RPL7P50-201ENST00000600588 727 ntBASIC4.61□□□□□ -1.67
VPS39Q96JC1 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC4.61□□□□□ -1.67
VPS39Q96JC1 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
VPS39Q96JC1 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
VPS39Q96JC1 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
VPS39Q96JC1 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
VPS39Q96JC1 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.61□□□□□ -1.67
VPS39Q96JC1 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.61□□□□□ -1.67
VPS39Q96JC1 AC006042.3-201ENST00000454684 1469 ntBASIC4.61□□□□□ -1.67
VPS39Q96JC1 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.61□□□□□ -1.67
VPS39Q96JC1 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC4.61□□□□□ -1.67
VPS39Q96JC1 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.61□□□□□ -1.67
VPS39Q96JC1 AL391684.1-202ENST00000641293 1636 ntBASIC4.61□□□□□ -1.67
VPS39Q96JC1 USP9YP4-201ENST00000424401 1745 ntBASIC4.6□□□□□ -1.67
VPS39Q96JC1 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
VPS39Q96JC1 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.6□□□□□ -1.67
VPS39Q96JC1 CARF-203ENST00000414439 2099 ntTSL 2 BASIC4.6□□□□□ -1.67
VPS39Q96JC1 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
VPS39Q96JC1 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.6□□□□□ -1.67
VPS39Q96JC1 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.6□□□□□ -1.67
VPS39Q96JC1 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.6□□□□□ -1.67
VPS39Q96JC1 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC4.6□□□□□ -1.67
VPS39Q96JC1 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC4.6□□□□□ -1.67
VPS39Q96JC1 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
VPS39Q96JC1 IL6STP1-201ENST00000346911 1020 ntBASIC4.6□□□□□ -1.67
VPS39Q96JC1 IGKV7-3-201ENST00000357453 298 ntBASIC4.6□□□□□ -1.67
VPS39Q96JC1 RNA5SP191-201ENST00000362585 102 ntBASIC4.6□□□□□ -1.67
VPS39Q96JC1 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
VPS39Q96JC1 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC4.6□□□□□ -1.67
VPS39Q96JC1 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
VPS39Q96JC1 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
VPS39Q96JC1 RNA5SP372-201ENST00000390836 115 ntBASIC4.6□□□□□ -1.67
VPS39Q96JC1 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.6□□□□□ -1.67
VPS39Q96JC1 COX6B1P1-201ENST00000415962 213 ntBASIC4.6□□□□□ -1.67
VPS39Q96JC1 RPL23AP25-201ENST00000430973 463 ntBASIC4.6□□□□□ -1.67
VPS39Q96JC1 AL935212.3-201ENST00000450729 284 ntBASIC4.6□□□□□ -1.67
VPS39Q96JC1 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC4.6□□□□□ -1.67
VPS39Q96JC1 AC005008.1-201ENST00000456151 612 ntBASIC4.6□□□□□ -1.67
VPS39Q96JC1 S100A11P1-201ENST00000477525 312 ntBASIC4.6□□□□□ -1.67
VPS39Q96JC1 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC4.6□□□□□ -1.67
VPS39Q96JC1 CARD16-203ENST00000525374 503 ntTSL 3 BASIC4.6□□□□□ -1.67
VPS39Q96JC1 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC4.6□□□□□ -1.67
VPS39Q96JC1 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC4.6□□□□□ -1.67
VPS39Q96JC1 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC4.6□□□□□ -1.67
VPS39Q96JC1 ELOCP28-201ENST00000590044 317 ntBASIC4.6□□□□□ -1.67
VPS39Q96JC1 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC4.6□□□□□ -1.67
VPS39Q96JC1 AC087283.1-201ENST00000604029 1074 ntBASIC4.6□□□□□ -1.67
VPS39Q96JC1 AC020658.4-201ENST00000613987 684 ntBASIC4.6□□□□□ -1.67
VPS39Q96JC1 LINC00216-201ENST00000623548 1126 ntBASIC4.6□□□□□ -1.67
VPS39Q96JC1 MFSD8-220ENST00000641243 1422 ntBASIC4.6□□□□□ -1.67
VPS39Q96JC1 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.6□□□□□ -1.67
VPS39Q96JC1 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.6□□□□□ -1.67
VPS39Q96JC1 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
VPS39Q96JC1 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
VPS39Q96JC1 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.59□□□□□ -1.67
VPS39Q96JC1 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
VPS39Q96JC1 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
VPS39Q96JC1 RNA5SP151-201ENST00000365632 117 ntBASIC4.59□□□□□ -1.67
VPS39Q96JC1 RPS24P12-201ENST00000402084 394 ntBASIC4.59□□□□□ -1.67
VPS39Q96JC1 TANK-203ENST00000402568 878 ntTSL 5 BASIC4.59□□□□□ -1.67
VPS39Q96JC1 FCF1P5-201ENST00000406490 482 ntBASIC4.59□□□□□ -1.67
VPS39Q96JC1 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
VPS39Q96JC1 AC140479.3-201ENST00000418944 1126 ntBASIC4.59□□□□□ -1.67
VPS39Q96JC1 AC004074.1-201ENST00000421810 1063 ntBASIC4.59□□□□□ -1.67
VPS39Q96JC1 AL445528.1-201ENST00000426330 420 ntBASIC4.59□□□□□ -1.67
VPS39Q96JC1 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC4.59□□□□□ -1.67
VPS39Q96JC1 MRPS33P4-201ENST00000434892 317 ntBASIC4.59□□□□□ -1.67
VPS39Q96JC1 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC4.59□□□□□ -1.67
VPS39Q96JC1 AC016831.4-201ENST00000438302 307 ntBASIC4.59□□□□□ -1.67
VPS39Q96JC1 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC4.59□□□□□ -1.67
VPS39Q96JC1 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC4.59□□□□□ -1.67
VPS39Q96JC1 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC4.59□□□□□ -1.67
VPS39Q96JC1 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC4.59□□□□□ -1.67
VPS39Q96JC1 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
VPS39Q96JC1 AC100871.1-201ENST00000507871 1456 ntBASIC4.59□□□□□ -1.67
VPS39Q96JC1 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
VPS39Q96JC1 RNU2-30P-201ENST00000516209 141 ntBASIC4.59□□□□□ -1.67
VPS39Q96JC1 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC4.59□□□□□ -1.67
VPS39Q96JC1 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
VPS39Q96JC1 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC4.59□□□□□ -1.67
VPS39Q96JC1 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC4.59□□□□□ -1.67
VPS39Q96JC1 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
VPS39Q96JC1 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC4.59□□□□□ -1.67
VPS39Q96JC1 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC4.59□□□□□ -1.67
VPS39Q96JC1 AC009117.1-201ENST00000563948 554 ntBASIC4.59□□□□□ -1.67
VPS39Q96JC1 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC4.59□□□□□ -1.67
VPS39Q96JC1 RN7SL52P-201ENST00000584271 284 ntBASIC4.59□□□□□ -1.67
VPS39Q96JC1 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC4.59□□□□□ -1.67
VPS39Q96JC1 SLC25A36P1-201ENST00000590111 465 ntBASIC4.59□□□□□ -1.67
VPS39Q96JC1 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC4.59□□□□□ -1.67
VPS39Q96JC1 AP003117.1-201ENST00000602771 554 ntBASIC4.59□□□□□ -1.67
VPS39Q96JC1 AL512782.1-201ENST00000603093 364 ntBASIC4.59□□□□□ -1.67
VPS39Q96JC1 AL133247.2-201ENST00000603236 482 ntBASIC4.59□□□□□ -1.67
VPS39Q96JC1 AC023762.1-201ENST00000603280 584 ntBASIC4.59□□□□□ -1.67
VPS39Q96JC1 AC026979.4-201ENST00000606555 645 ntBASIC4.59□□□□□ -1.67
VPS39Q96JC1 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC4.59□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 90.9 ms