Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 PBRM1-203ENST00000356770 7523 ntAPPRIS ALT1 TSL 1 (best) BASIC2.88□□□□□ -1.95
PRKDCP78527 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC2.88□□□□□ -1.95
PRKDCP78527 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC2.88□□□□□ -1.95
PRKDCP78527 AC080014.1-201ENST00000496877 1201 ntBASIC2.88□□□□□ -1.95
PRKDCP78527 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
PRKDCP78527 EIF5A2P1-201ENST00000564027 460 ntBASIC2.88□□□□□ -1.95
PRKDCP78527 MIR4769-201ENST00000584126 77 ntBASIC2.88□□□□□ -1.95
PRKDCP78527 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC2.88□□□□□ -1.95
PRKDCP78527 AC006386.2-201ENST00000624491 75 ntBASIC2.88□□□□□ -1.95
PRKDCP78527 AC012005.1-201ENST00000624575 75 ntBASIC2.88□□□□□ -1.95
PRKDCP78527 ZHX3-201ENST00000309060 10030 ntAPPRIS P1 TSL 5 BASIC2.88□□□□□ -1.95
PRKDCP78527 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC2.88□□□□□ -1.95
PRKDCP78527 APOB-201ENST00000233242 14121 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
PRKDCP78527 NXPH1-205ENST00000602349 1953 ntBASIC2.88□□□□□ -1.95
PRKDCP78527 AL136164.3-201ENST00000624429 3978 ntBASIC2.88□□□□□ -1.95
PRKDCP78527 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC2.88□□□□□ -1.95
PRKDCP78527 SLC35A3-207ENST00000533028 14759 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
PRKDCP78527 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC2.88□□□□□ -1.95
PRKDCP78527 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC2.88□□□□□ -1.95
PRKDCP78527 AC097713.2-201ENST00000430199 356 ntBASIC2.88□□□□□ -1.95
PRKDCP78527 AL157385.1-201ENST00000446973 268 ntBASIC2.88□□□□□ -1.95
PRKDCP78527 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.88□□□□□ -1.95
PRKDCP78527 AC091167.4-201ENST00000605079 184 ntBASIC2.88□□□□□ -1.95
PRKDCP78527 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC2.88□□□□□ -1.95
PRKDCP78527 BTBD10P1-201ENST00000549824 1352 ntBASIC2.88□□□□□ -1.95
PRKDCP78527 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC2.88□□□□□ -1.95
PRKDCP78527 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
PRKDCP78527 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC2.88□□□□□ -1.95
PRKDCP78527 CCP110-202ENST00000396208 5151 ntAPPRIS P3 TSL 1 (best) BASIC2.88□□□□□ -1.95
PRKDCP78527 AC097461.1-201ENST00000568928 2821 ntBASIC2.88□□□□□ -1.95
PRKDCP78527 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC2.88□□□□□ -1.95
PRKDCP78527 KIF1B-203ENST00000377083 5885 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
PRKDCP78527 PPARGC1B-201ENST00000309241 10568 ntAPPRIS P3 TSL 1 (best) BASIC2.88□□□□□ -1.95
PRKDCP78527 AL033543.1-201ENST00000623440 13454 ntBASIC2.88□□□□□ -1.95
PRKDCP78527 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
PRKDCP78527 AC079777.1-201ENST00000623836 1953 ntBASIC2.88□□□□□ -1.95
PRKDCP78527 TBC1D30-204ENST00000542120 7433 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
PRKDCP78527 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
PRKDCP78527 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC2.87□□□□□ -1.95
PRKDCP78527 HMGB3P19-201ENST00000403971 560 ntBASIC2.87□□□□□ -1.95
PRKDCP78527 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC2.87□□□□□ -1.95
PRKDCP78527 PCNPP4-201ENST00000414817 517 ntBASIC2.87□□□□□ -1.95
PRKDCP78527 UBE2V1P1-201ENST00000430836 445 ntBASIC2.87□□□□□ -1.95
PRKDCP78527 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC2.87□□□□□ -1.95
PRKDCP78527 AC125494.3-201ENST00000602759 455 ntBASIC2.87□□□□□ -1.95
PRKDCP78527 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC2.87□□□□□ -1.95
PRKDCP78527 TEX41-256ENST00000626411 368 ntTSL 5 BASIC2.87□□□□□ -1.95
PRKDCP78527 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC2.87□□□□□ -1.95
PRKDCP78527 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC2.87□□□□□ -1.95
PRKDCP78527 PKHD1-201ENST00000340994 11589 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
PRKDCP78527 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC2.87□□□□□ -1.95
PRKDCP78527 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC2.87□□□□□ -1.95
PRKDCP78527 MTND2P15-201ENST00000418575 892 ntBASIC2.87□□□□□ -1.95
PRKDCP78527 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC2.87□□□□□ -1.95
PRKDCP78527 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC2.87□□□□□ -1.95
PRKDCP78527 OR8I1P-201ENST00000529291 931 ntBASIC2.87□□□□□ -1.95
PRKDCP78527 AL352979.3-201ENST00000553515 247 ntBASIC2.87□□□□□ -1.95
PRKDCP78527 NPM1P47-201ENST00000560843 856 ntBASIC2.87□□□□□ -1.95
PRKDCP78527 AC091178.1-203ENST00000584586 279 ntBASIC2.87□□□□□ -1.95
PRKDCP78527 AC104763.2-201ENST00000604179 382 ntBASIC2.87□□□□□ -1.95
PRKDCP78527 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC2.87□□□□□ -1.95
PRKDCP78527 IL16-204ENST00000394660 9616 ntAPPRIS ALT2 TSL 2 BASIC2.87□□□□□ -1.95
PRKDCP78527 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC2.87□□□□□ -1.95
PRKDCP78527 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC2.87□□□□□ -1.95
PRKDCP78527 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC2.87□□□□□ -1.95
PRKDCP78527 IPCEF1-201ENST00000265198 6689 ntAPPRIS P3 TSL 1 (best) BASIC2.87□□□□□ -1.95
PRKDCP78527 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC2.87□□□□□ -1.95
PRKDCP78527 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
PRKDCP78527 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
PRKDCP78527 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
PRKDCP78527 OR10J6P-201ENST00000289731 930 ntBASIC2.87□□□□□ -1.95
PRKDCP78527 EI24P3-201ENST00000399046 1062 ntBASIC2.87□□□□□ -1.95
PRKDCP78527 RPL21P91-201ENST00000429231 479 ntBASIC2.87□□□□□ -1.95
PRKDCP78527 AC087650.1-201ENST00000431445 468 ntBASIC2.87□□□□□ -1.95
PRKDCP78527 AC009963.4-201ENST00000448535 339 ntBASIC2.87□□□□□ -1.95
PRKDCP78527 RPS29P19-201ENST00000479709 171 ntBASIC2.87□□□□□ -1.95
PRKDCP78527 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC2.87□□□□□ -1.95
PRKDCP78527 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC2.87□□□□□ -1.95
PRKDCP78527 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC2.87□□□□□ -1.95
PRKDCP78527 LINC00561-201ENST00000565815 2738 ntBASIC2.87□□□□□ -1.95
PRKDCP78527 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC2.87□□□□□ -1.95
PRKDCP78527 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
PRKDCP78527 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC2.87□□□□□ -1.95
PRKDCP78527 FAP-203ENST00000443424 2598 ntTSL 2 BASIC2.87□□□□□ -1.95
PRKDCP78527 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
PRKDCP78527 HMGB3P9-201ENST00000441799 583 ntBASIC2.87□□□□□ -1.95
PRKDCP78527 RPS3AP46-201ENST00000448352 682 ntBASIC2.87□□□□□ -1.95
PRKDCP78527 AP002360.3-201ENST00000607673 710 ntBASIC2.87□□□□□ -1.95
PRKDCP78527 POLA1-201ENST00000379059 5440 ntAPPRIS P3 TSL 1 (best) BASIC2.87□□□□□ -1.95
PRKDCP78527 POLA1-206ENST00000611764 5434 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
PRKDCP78527 LRRC37A9P-201ENST00000603850 5376 ntBASIC2.86□□□□□ -1.95
PRKDCP78527 TSC1-203ENST00000440111 8463 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
PRKDCP78527 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC2.86□□□□□ -1.95
PRKDCP78527 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
PRKDCP78527 SMC2-201ENST00000286398 5992 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
PRKDCP78527 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC2.86□□□□□ -1.95
PRKDCP78527 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC2.86□□□□□ -1.95
PRKDCP78527 LINC02035-201ENST00000610128 5476 ntBASIC2.86□□□□□ -1.95
PRKDCP78527 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC2.86□□□□□ -1.95
PRKDCP78527 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC2.86□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 83.5 ms