Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC091167.4-201ENST00000605079 184 ntBASIC5.33□□□□□ -1.56
COL18A1P39060 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL18A1P39060 AL672167.1-203ENST00000641299 2975 ntBASIC5.33□□□□□ -1.56
COL18A1P39060 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC5.33□□□□□ -1.56
COL18A1P39060 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
COL18A1P39060 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL18A1P39060 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL18A1P39060 EOGT-210ENST00000615922 1931 ntBASIC5.32□□□□□ -1.56
COL18A1P39060 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL18A1P39060 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
COL18A1P39060 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC5.32□□□□□ -1.56
COL18A1P39060 AL451050.1-201ENST00000450126 415 ntBASIC5.32□□□□□ -1.56
COL18A1P39060 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC5.32□□□□□ -1.56
COL18A1P39060 UBE2CP3-201ENST00000502715 450 ntBASIC5.32□□□□□ -1.56
COL18A1P39060 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC5.32□□□□□ -1.56
COL18A1P39060 SNX6P1-201ENST00000601728 1224 ntBASIC5.32□□□□□ -1.56
COL18A1P39060 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC5.32□□□□□ -1.56
COL18A1P39060 AC096553.1-201ENST00000605169 829 ntBASIC5.32□□□□□ -1.56
COL18A1P39060 THAP12P5-201ENST00000405864 2275 ntBASIC5.32□□□□□ -1.56
COL18A1P39060 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC5.32□□□□□ -1.56
COL18A1P39060 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL18A1P39060 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
COL18A1P39060 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
COL18A1P39060 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL18A1P39060 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
COL18A1P39060 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL18A1P39060 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC5.32□□□□□ -1.56
COL18A1P39060 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC5.32□□□□□ -1.56
COL18A1P39060 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC5.32□□□□□ -1.56
COL18A1P39060 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC5.32□□□□□ -1.56
COL18A1P39060 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC5.32□□□□□ -1.56
COL18A1P39060 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
COL18A1P39060 IGKV1OR2-1-201ENST00000514060 354 ntBASIC5.32□□□□□ -1.56
COL18A1P39060 MTND1P6-201ENST00000523621 946 ntBASIC5.32□□□□□ -1.56
COL18A1P39060 RNU1-30P-201ENST00000606575 163 ntBASIC5.32□□□□□ -1.56
COL18A1P39060 AL391261.4-201ENST00000616012 481 ntBASIC5.32□□□□□ -1.56
COL18A1P39060 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC5.32□□□□□ -1.56
COL18A1P39060 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL18A1P39060 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC5.31□□□□□ -1.56
COL18A1P39060 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL18A1P39060 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL18A1P39060 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC5.31□□□□□ -1.56
COL18A1P39060 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL18A1P39060 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL18A1P39060 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC5.31□□□□□ -1.56
COL18A1P39060 DEFB109A-201ENST00000482450 265 ntBASIC5.31□□□□□ -1.56
COL18A1P39060 AC244505.7-201ENST00000599675 272 ntBASIC5.31□□□□□ -1.56
COL18A1P39060 AC015871.5-202ENST00000623252 701 ntBASIC5.31□□□□□ -1.56
COL18A1P39060 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
COL18A1P39060 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
COL18A1P39060 SPATA31D2P-201ENST00000429999 4388 ntBASIC5.31□□□□□ -1.56
COL18A1P39060 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
COL18A1P39060 PDE1C-203ENST00000396184 8852 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL18A1P39060 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC5.3□□□□□ -1.56
COL18A1P39060 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL18A1P39060 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL18A1P39060 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC5.3□□□□□ -1.56
COL18A1P39060 SKP1P3-201ENST00000429280 487 ntBASIC5.3□□□□□ -1.56
COL18A1P39060 PPIAP15-201ENST00000479662 484 ntBASIC5.3□□□□□ -1.56
COL18A1P39060 AC063950.1-201ENST00000552036 308 ntBASIC5.3□□□□□ -1.56
COL18A1P39060 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC5.3□□□□□ -1.56
COL18A1P39060 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC5.3□□□□□ -1.56
COL18A1P39060 EIF4A2P1-201ENST00000587313 1063 ntBASIC5.3□□□□□ -1.56
COL18A1P39060 AL645927.2-201ENST00000618350 349 ntBASIC5.3□□□□□ -1.56
COL18A1P39060 AC140113.4-201ENST00000622087 222 ntBASIC5.3□□□□□ -1.56
COL18A1P39060 LINC00561-201ENST00000565815 2738 ntBASIC5.3□□□□□ -1.56
COL18A1P39060 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.3□□□□□ -1.56
COL18A1P39060 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL18A1P39060 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC5.3□□□□□ -1.56
COL18A1P39060 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
COL18A1P39060 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
COL18A1P39060 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC5.3□□□□□ -1.56
COL18A1P39060 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL18A1P39060 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
COL18A1P39060 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC5.29□□□□□ -1.56
COL18A1P39060 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
COL18A1P39060 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
COL18A1P39060 RNU7-143P-201ENST00000516781 65 ntBASIC5.29□□□□□ -1.56
COL18A1P39060 ANP32E-205ENST00000533654 908 ntTSL 2 BASIC5.29□□□□□ -1.56
COL18A1P39060 CYCSP30-201ENST00000546447 172 ntBASIC5.29□□□□□ -1.56
COL18A1P39060 AC022968.1-201ENST00000567372 442 ntBASIC5.29□□□□□ -1.56
COL18A1P39060 AC107993.1-201ENST00000591343 684 ntBASIC5.29□□□□□ -1.56
COL18A1P39060 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC5.29□□□□□ -1.56
COL18A1P39060 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC5.29□□□□□ -1.56
COL18A1P39060 AP005264.7-201ENST00000625003 745 ntBASIC5.29□□□□□ -1.56
COL18A1P39060 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
COL18A1P39060 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
COL18A1P39060 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL18A1P39060 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
COL18A1P39060 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
COL18A1P39060 C4orf33-202ENST00000425929 1588 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
COL18A1P39060 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL18A1P39060 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL18A1P39060 BIRC6-201ENST00000421745 15703 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL18A1P39060 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL18A1P39060 ZNF402P-201ENST00000404435 3100 ntBASIC5.29□□□□□ -1.56
COL18A1P39060 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC5.29□□□□□ -1.56
COL18A1P39060 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC5.29□□□□□ -1.56
COL18A1P39060 ADGRL3-205ENST00000506746 4935 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
COL18A1P39060 RNA5SP97-201ENST00000365006 84 ntBASIC5.29□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms