Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AGTPBP1-202ENST00000357081 4393 ntTSL 5 BASIC7.48□□□□□ -1.21
COL9A1P20849 DNAJC18-201ENST00000302060 5103 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
COL9A1P20849 AC010894.1-201ENST00000313760 361 ntBASIC7.48□□□□□ -1.21
COL9A1P20849 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
COL9A1P20849 Y_RNA.150-201ENST00000363562 102 ntBASIC7.48□□□□□ -1.21
COL9A1P20849 RNA5SP152-201ENST00000365184 110 ntBASIC7.48□□□□□ -1.21
COL9A1P20849 RNA5SP240-201ENST00000365355 128 ntBASIC7.48□□□□□ -1.21
COL9A1P20849 RNA5SP85-201ENST00000365378 119 ntBASIC7.48□□□□□ -1.21
COL9A1P20849 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
COL9A1P20849 Y_RNA.464-201ENST00000384282 110 ntBASIC7.48□□□□□ -1.21
COL9A1P20849 ADAL-201ENST00000389651 1559 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
COL9A1P20849 SDHC-203ENST00000392169 369 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
COL9A1P20849 ST7-206ENST00000393447 2182 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
COL9A1P20849 ADA2-204ENST00000399839 3986 ntAPPRIS P3 TSL 5 BASIC7.48□□□□□ -1.21
COL9A1P20849 AL356421.1-201ENST00000403255 413 ntBASIC7.48□□□□□ -1.21
COL9A1P20849 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC7.48□□□□□ -1.21
COL9A1P20849 E2F6P2-201ENST00000420708 748 ntBASIC7.48□□□□□ -1.21
COL9A1P20849 AC010148.1-201ENST00000427619 707 ntTSL 3 BASIC7.48□□□□□ -1.21
COL9A1P20849 AL160004.1-201ENST00000434311 478 ntTSL 3 BASIC7.48□□□□□ -1.21
COL9A1P20849 AL031316.1-202ENST00000441672 449 ntTSL 3 BASIC7.48□□□□□ -1.21
COL9A1P20849 LINC01525-201ENST00000442182 511 ntTSL 2 BASIC7.48□□□□□ -1.21
COL9A1P20849 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC7.48□□□□□ -1.21
COL9A1P20849 RPS15AP1-201ENST00000457423 391 ntBASIC7.48□□□□□ -1.21
COL9A1P20849 AC055855.1-201ENST00000489563 579 ntBASIC7.48□□□□□ -1.21
COL9A1P20849 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
COL9A1P20849 AC114801.2-201ENST00000503825 781 ntBASIC7.48□□□□□ -1.21
COL9A1P20849 AC105150.1-201ENST00000518011 551 ntTSL 3 BASIC7.48□□□□□ -1.21
COL9A1P20849 AC084125.1-201ENST00000525461 429 ntTSL 3 BASIC7.48□□□□□ -1.21
COL9A1P20849 AP001803.1-201ENST00000525668 147 ntBASIC7.48□□□□□ -1.21
COL9A1P20849 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC7.48□□□□□ -1.21
COL9A1P20849 AC117373.1-201ENST00000544036 392 ntTSL 3 BASIC7.48□□□□□ -1.21
COL9A1P20849 HSBP1P1-201ENST00000555205 166 ntBASIC7.48□□□□□ -1.21
COL9A1P20849 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC7.48□□□□□ -1.21
COL9A1P20849 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC7.48□□□□□ -1.21
COL9A1P20849 LINC01915-201ENST00000577994 2321 ntTSL 2 BASIC7.48□□□□□ -1.21
COL9A1P20849 AC211433.2-201ENST00000608433 387 ntBASIC7.48□□□□□ -1.21
COL9A1P20849 uc_338.31-201ENST00000615595 186 ntBASIC7.48□□□□□ -1.21
COL9A1P20849 NAA60-237ENST00000615865 326 ntTSL 5 BASIC7.48□□□□□ -1.21
COL9A1P20849 MIAT_exon5_1.1-201ENST00000618919 149 ntBASIC7.48□□□□□ -1.21
COL9A1P20849 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC7.48□□□□□ -1.21
COL9A1P20849 WDR75-207ENST00000631047 270 ntTSL 5 BASIC7.48□□□□□ -1.21
COL9A1P20849 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC7.48□□□□□ -1.21
COL9A1P20849 PGR-202ENST00000325455 13748 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
COL9A1P20849 MTPN-201ENST00000393085 3738 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
COL9A1P20849 AC090643.1-201ENST00000623600 3100 ntBASIC7.48□□□□□ -1.21
COL9A1P20849 LMCD1-AS1-203ENST00000441861 2683 ntTSL 2 BASIC7.48□□□□□ -1.21
COL9A1P20849 ATP2B4-203ENST00000357681 8968 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
COL9A1P20849 CORO1C-202ENST00000420959 3921 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
COL9A1P20849 LINC00922-203ENST00000569736 1760 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
COL9A1P20849 AP001043.1-202ENST00000380931 5027 ntTSL 2 BASIC7.48□□□□□ -1.21
COL9A1P20849 MARCH6-204ENST00000503788 2874 ntTSL 2 BASIC7.48□□□□□ -1.21
COL9A1P20849 ASPH-230ENST00000541428 2550 ntAPPRIS ALT2 TSL 2 BASIC7.48□□□□□ -1.21
COL9A1P20849 CACNB2-213ENST00000612134 3825 ntTSL 5 BASIC7.48□□□□□ -1.21
COL9A1P20849 AP002833.3-201ENST00000625075 2265 ntBASIC7.48□□□□□ -1.21
COL9A1P20849 AGBL1-205ENST00000635782 3201 ntAPPRIS P2 TSL 5 BASIC7.48□□□□□ -1.21
COL9A1P20849 ZNF595-204ENST00000609518 2115 ntAPPRIS ALT2 TSL 2 BASIC7.48□□□□□ -1.21
COL9A1P20849 PHF6-202ENST00000370799 4186 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
COL9A1P20849 TTC39B-207ENST00000507993 1950 ntAPPRIS ALT2 TSL 2 BASIC7.48□□□□□ -1.21
COL9A1P20849 KPNB1-203ENST00000540627 2989 ntTSL 2 BASIC7.47□□□□□ -1.21
COL9A1P20849 WNT2B-203ENST00000369686 10879 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
COL9A1P20849 KLHL2-204ENST00000506761 2169 ntTSL 5 BASIC7.47□□□□□ -1.21
COL9A1P20849 AMBRA1-206ENST00000528950 4102 ntTSL 5 BASIC7.47□□□□□ -1.21
COL9A1P20849 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC7.47□□□□□ -1.21
COL9A1P20849 PLEKHS1-203ENST00000369309 2534 ntTSL 5 BASIC7.47□□□□□ -1.21
COL9A1P20849 BCAT1-202ENST00000342945 4319 ntTSL 2 BASIC7.47□□□□□ -1.21
COL9A1P20849 CLNK-204ENST00000515667 4180 ntAPPRIS ALT2 TSL 3 BASIC7.47□□□□□ -1.21
COL9A1P20849 PAPD4-203ENST00000428308 2204 ntAPPRIS P3 TSL 2 BASIC7.47□□□□□ -1.21
COL9A1P20849 PPP1R12B-204ENST00000391959 15431 ntTSL 5 BASIC7.47□□□□□ -1.21
COL9A1P20849 SCUBE3-201ENST00000274938 7356 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL9A1P20849 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
COL9A1P20849 CC2D2A-204ENST00000503292 5175 ntAPPRIS P3 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL9A1P20849 GNG13-201ENST00000248150 984 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL9A1P20849 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL9A1P20849 RNU6-562P-201ENST00000362731 107 ntBASIC7.47□□□□□ -1.21
COL9A1P20849 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL9A1P20849 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
COL9A1P20849 SNORA11-201ENST00000408789 128 ntBASIC7.47□□□□□ -1.21
COL9A1P20849 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC7.47□□□□□ -1.21
COL9A1P20849 ZEB2-AS1-203ENST00000428623 436 ntTSL 2 BASIC7.47□□□□□ -1.21
COL9A1P20849 PTCSC2-201ENST00000430058 204 ntTSL 2 BASIC7.47□□□□□ -1.21
COL9A1P20849 AC099799.1-201ENST00000439809 192 ntBASIC7.47□□□□□ -1.21
COL9A1P20849 AL035551.1-201ENST00000446931 348 ntBASIC7.47□□□□□ -1.21
COL9A1P20849 AC013470.1-201ENST00000453438 462 ntBASIC7.47□□□□□ -1.21
COL9A1P20849 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC7.47□□□□□ -1.21
COL9A1P20849 GAPDHP53-201ENST00000458397 924 ntBASIC7.47□□□□□ -1.21
COL9A1P20849 SIAH1P1-201ENST00000479411 923 ntBASIC7.47□□□□□ -1.21
COL9A1P20849 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC7.47□□□□□ -1.21
COL9A1P20849 HMGB1P35-201ENST00000503360 598 ntBASIC7.47□□□□□ -1.21
COL9A1P20849 AC022493.2-201ENST00000506122 481 ntBASIC7.47□□□□□ -1.21
COL9A1P20849 MTCO3P44-201ENST00000510977 541 ntBASIC7.47□□□□□ -1.21
COL9A1P20849 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
COL9A1P20849 RNU6-488P-201ENST00000515918 99 ntBASIC7.47□□□□□ -1.21
COL9A1P20849 Y_RNA.673-201ENST00000516306 88 ntBASIC7.47□□□□□ -1.21
COL9A1P20849 RNU6-111P-201ENST00000517179 105 ntBASIC7.47□□□□□ -1.21
COL9A1P20849 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC7.47□□□□□ -1.21
COL9A1P20849 AL049779.3-201ENST00000557141 606 ntBASIC7.47□□□□□ -1.21
COL9A1P20849 HMGB3P26-201ENST00000560051 582 ntBASIC7.47□□□□□ -1.21
COL9A1P20849 AC015908.3-202ENST00000579367 457 ntTSL 2 BASIC7.47□□□□□ -1.21
COL9A1P20849 MIR3133-201ENST00000583157 78 ntBASIC7.47□□□□□ -1.21
COL9A1P20849 AC011476.3-203ENST00000586961 346 ntTSL 5 BASIC7.47□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms