Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC4.97□□□□□ -1.61
HOXA3O43365 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC4.97□□□□□ -1.61
HOXA3O43365 AP001858.2-201ENST00000536213 601 ntBASIC4.97□□□□□ -1.61
HOXA3O43365 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC4.97□□□□□ -1.61
HOXA3O43365 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
HOXA3O43365 OTX2-203ENST00000554559 715 ntTSL 5 BASIC4.97□□□□□ -1.61
HOXA3O43365 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC4.97□□□□□ -1.61
HOXA3O43365 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC4.97□□□□□ -1.61
HOXA3O43365 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC4.97□□□□□ -1.61
HOXA3O43365 WDR61-205ENST00000558459 884 ntTSL 3 BASIC4.97□□□□□ -1.61
HOXA3O43365 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC4.97□□□□□ -1.61
HOXA3O43365 UBE2FP2-201ENST00000566646 462 ntBASIC4.97□□□□□ -1.61
HOXA3O43365 AC141257.3-201ENST00000572906 215 ntBASIC4.97□□□□□ -1.61
HOXA3O43365 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC4.97□□□□□ -1.61
HOXA3O43365 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC4.97□□□□□ -1.61
HOXA3O43365 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC4.97□□□□□ -1.61
HOXA3O43365 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC4.97□□□□□ -1.61
HOXA3O43365 VN1R84P-201ENST00000593697 235 ntBASIC4.97□□□□□ -1.61
HOXA3O43365 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC4.97□□□□□ -1.61
HOXA3O43365 BNIP3P8-201ENST00000597863 560 ntBASIC4.97□□□□□ -1.61
HOXA3O43365 PRELID3BP8-201ENST00000604148 295 ntBASIC4.97□□□□□ -1.61
HOXA3O43365 LAPTM4BP2-201ENST00000604542 446 ntBASIC4.97□□□□□ -1.61
HOXA3O43365 AC080013.4-201ENST00000607624 649 ntBASIC4.97□□□□□ -1.61
HOXA3O43365 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC4.97□□□□□ -1.61
HOXA3O43365 AP001521.1-201ENST00000609150 300 ntBASIC4.97□□□□□ -1.61
HOXA3O43365 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC4.97□□□□□ -1.61
HOXA3O43365 AC025253.1-201ENST00000613623 543 ntBASIC4.97□□□□□ -1.61
HOXA3O43365 AL352984.2-202ENST00000613699 155 ntBASIC4.97□□□□□ -1.61
HOXA3O43365 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC4.97□□□□□ -1.61
HOXA3O43365 AL139089.1-201ENST00000620372 975 ntBASIC4.97□□□□□ -1.61
HOXA3O43365 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC4.97□□□□□ -1.61
HOXA3O43365 TEX41-254ENST00000626394 423 ntTSL 5 BASIC4.97□□□□□ -1.61
HOXA3O43365 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC4.97□□□□□ -1.61
HOXA3O43365 AC073488.3-201ENST00000631611 778 ntBASIC4.97□□□□□ -1.61
HOXA3O43365 GOLT1B-201ENST00000229314 3227 ntAPPRIS P2 TSL 1 (best) BASIC4.97□□□□□ -1.61
HOXA3O43365 AC022905.1-201ENST00000503430 3048 ntBASIC4.97□□□□□ -1.61
HOXA3O43365 LINC00561-201ENST00000565815 2738 ntBASIC4.97□□□□□ -1.61
HOXA3O43365 LZTFL1-201ENST00000296135 4073 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
HOXA3O43365 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
HOXA3O43365 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
HOXA3O43365 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
HOXA3O43365 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
HOXA3O43365 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC4.97□□□□□ -1.61
HOXA3O43365 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
HOXA3O43365 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
HOXA3O43365 CEACAM1-203ENST00000352591 3170 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
HOXA3O43365 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
HOXA3O43365 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC4.97□□□□□ -1.61
HOXA3O43365 HAVCR1-204ENST00000522693 1713 ntAPPRIS ALT2 TSL 2 BASIC4.97□□□□□ -1.61
HOXA3O43365 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC4.97□□□□□ -1.61
HOXA3O43365 CREM-203ENST00000344351 1625 ntTSL 2 BASIC4.97□□□□□ -1.61
HOXA3O43365 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
HOXA3O43365 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
HOXA3O43365 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC4.97□□□□□ -1.61
HOXA3O43365 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
HOXA3O43365 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC4.96□□□□□ -1.61
HOXA3O43365 AC130360.2-201ENST00000533477 1556 ntBASIC4.96□□□□□ -1.62
HOXA3O43365 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.62
HOXA3O43365 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.62
HOXA3O43365 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.62
HOXA3O43365 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
HOXA3O43365 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
HOXA3O43365 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC4.96□□□□□ -1.62
HOXA3O43365 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC4.96□□□□□ -1.62
HOXA3O43365 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.62
HOXA3O43365 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
HOXA3O43365 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
HOXA3O43365 Y_RNA.97-201ENST00000363094 102 ntBASIC4.96□□□□□ -1.62
HOXA3O43365 RNU4-12P-201ENST00000365233 139 ntBASIC4.96□□□□□ -1.62
HOXA3O43365 RN7SKP81-201ENST00000365603 331 ntBASIC4.96□□□□□ -1.62
HOXA3O43365 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC4.96□□□□□ -1.62
HOXA3O43365 MTND4LP20-201ENST00000402379 270 ntBASIC4.96□□□□□ -1.62
HOXA3O43365 RNU2-22P-201ENST00000411266 212 ntBASIC4.96□□□□□ -1.62
HOXA3O43365 USP9YP6-201ENST00000413550 854 ntBASIC4.96□□□□□ -1.62
HOXA3O43365 GSTM2-205ENST00000414179 982 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
HOXA3O43365 AC234782.4-201ENST00000417646 1048 ntBASIC4.96□□□□□ -1.62
HOXA3O43365 RPL35AP31-201ENST00000418340 337 ntBASIC4.96□□□□□ -1.62
HOXA3O43365 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC4.96□□□□□ -1.62
HOXA3O43365 AC007742.1-201ENST00000425789 329 ntBASIC4.96□□□□□ -1.62
HOXA3O43365 ZNF863P-201ENST00000426746 417 ntBASIC4.96□□□□□ -1.62
HOXA3O43365 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC4.96□□□□□ -1.62
HOXA3O43365 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC4.96□□□□□ -1.62
HOXA3O43365 ELOCP26-201ENST00000436067 329 ntBASIC4.96□□□□□ -1.62
HOXA3O43365 LINC01831-201ENST00000449772 493 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
HOXA3O43365 USP9YP12-201ENST00000450481 570 ntBASIC4.96□□□□□ -1.62
HOXA3O43365 AL672138.1-201ENST00000450604 1015 ntBASIC4.96□□□□□ -1.62
HOXA3O43365 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC4.96□□□□□ -1.62
HOXA3O43365 USP9YP34-201ENST00000453983 808 ntBASIC4.96□□□□□ -1.62
HOXA3O43365 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC4.96□□□□□ -1.62
HOXA3O43365 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC4.96□□□□□ -1.62
HOXA3O43365 UBA52P3-201ENST00000491303 382 ntBASIC4.96□□□□□ -1.62
HOXA3O43365 FAM92A1P2-202ENST00000504766 877 ntBASIC4.96□□□□□ -1.62
HOXA3O43365 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC4.96□□□□□ -1.62
HOXA3O43365 NDUFB4P2-201ENST00000509515 391 ntBASIC4.96□□□□□ -1.62
HOXA3O43365 AC091133.4-201ENST00000511142 308 ntBASIC4.96□□□□□ -1.62
HOXA3O43365 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC4.96□□□□□ -1.62
HOXA3O43365 AC114781.3-201ENST00000512083 142 ntBASIC4.96□□□□□ -1.62
HOXA3O43365 AC074344.1-201ENST00000512823 224 ntBASIC4.96□□□□□ -1.62
HOXA3O43365 SNORD46.2-201ENST00000516021 102 ntBASIC4.96□□□□□ -1.62
HOXA3O43365 Y_RNA.667-201ENST00000516212 107 ntBASIC4.96□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 85.5 ms