Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC134980.1-209ENST00000639059 2317 ntTSL 2 BASIC6.14□□□□□ -1.43
COL8A1P27658 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
COL8A1P27658 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
COL8A1P27658 PCDH15-213ENST00000395445 5917 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL8A1P27658 GCNT3-209ENST00000560585 2360 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL8A1P27658 SYNE1-213ENST00000448038 6001 ntTSL 5 BASIC6.14□□□□□ -1.43
COL8A1P27658 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL8A1P27658 AC013488.1-201ENST00000526618 1838 ntBASIC6.14□□□□□ -1.43
COL8A1P27658 MAPK14-203ENST00000310795 1066 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL8A1P27658 Y_RNA.180-201ENST00000363867 113 ntBASIC6.14□□□□□ -1.43
COL8A1P27658 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC6.14□□□□□ -1.43
COL8A1P27658 AL591416.1-201ENST00000404015 867 ntBASIC6.14□□□□□ -1.43
COL8A1P27658 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC6.14□□□□□ -1.43
COL8A1P27658 AL137014.1-201ENST00000420490 1226 ntBASIC6.14□□□□□ -1.43
COL8A1P27658 AC010145.1-201ENST00000422415 516 ntTSL 5 BASIC6.14□□□□□ -1.43
COL8A1P27658 RPL12P16-201ENST00000431098 498 ntBASIC6.14□□□□□ -1.43
COL8A1P27658 AL035701.1-202ENST00000437249 371 ntTSL 3 BASIC6.14□□□□□ -1.43
COL8A1P27658 AL138767.3-201ENST00000438082 495 ntTSL 3 BASIC6.14□□□□□ -1.43
COL8A1P27658 AC002504.1-201ENST00000438281 691 ntBASIC6.14□□□□□ -1.43
COL8A1P27658 RPL21P23-201ENST00000446654 460 ntBASIC6.14□□□□□ -1.43
COL8A1P27658 SLC31A1P1-201ENST00000451221 567 ntBASIC6.14□□□□□ -1.43
COL8A1P27658 MTND3P16-201ENST00000452205 344 ntBASIC6.14□□□□□ -1.43
COL8A1P27658 RPSAP7-201ENST00000456871 885 ntBASIC6.14□□□□□ -1.43
COL8A1P27658 RPS20P21-201ENST00000466859 343 ntBASIC6.14□□□□□ -1.43
COL8A1P27658 RPL38P3-201ENST00000484463 213 ntBASIC6.14□□□□□ -1.43
COL8A1P27658 RN7SL101P-201ENST00000496350 279 ntBASIC6.14□□□□□ -1.43
COL8A1P27658 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC6.14□□□□□ -1.43
COL8A1P27658 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC6.14□□□□□ -1.43
COL8A1P27658 RNU6-864P-201ENST00000516256 108 ntBASIC6.14□□□□□ -1.43
COL8A1P27658 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC6.14□□□□□ -1.43
COL8A1P27658 SLC7A7-210ENST00000554517 1158 ntTSL 5 BASIC6.14□□□□□ -1.43
COL8A1P27658 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC6.14□□□□□ -1.43
COL8A1P27658 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC6.14□□□□□ -1.43
COL8A1P27658 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC6.14□□□□□ -1.43
COL8A1P27658 APOC2-205ENST00000592257 444 ntTSL 3 BASIC6.14□□□□□ -1.43
COL8A1P27658 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC6.14□□□□□ -1.43
COL8A1P27658 AC010605.1-201ENST00000597303 797 ntTSL 2 BASIC6.14□□□□□ -1.43
COL8A1P27658 AC243312.2-201ENST00000623340 601 ntBASIC6.14□□□□□ -1.43
COL8A1P27658 PRKCH-228ENST00000640011 285 ntTSL 5 BASIC6.14□□□□□ -1.43
COL8A1P27658 AC010325.3-201ENST00000641084 394 ntBASIC6.14□□□□□ -1.43
COL8A1P27658 SMC1A-201ENST00000322213 9784 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL8A1P27658 MGAM-202ENST00000475668 9172 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.43
COL8A1P27658 AMBN-203ENST00000613447 1997 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
COL8A1P27658 PDLIM5-219ENST00000514743 3356 ntTSL 2 BASIC6.14□□□□□ -1.43
COL8A1P27658 PKIA-AS1-202ENST00000522302 2011 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL8A1P27658 SLC36A2-201ENST00000335244 3421 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL8A1P27658 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
COL8A1P27658 THOC1-201ENST00000261600 2087 ntAPPRIS P2 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL8A1P27658 UBN1-208ENST00000590769 3530 ntTSL 2 BASIC6.14□□□□□ -1.43
COL8A1P27658 LINC02208-201ENST00000506769 2803 ntTSL 5 BASIC6.14□□□□□ -1.43
COL8A1P27658 MAP4K4-203ENST00000347699 3792 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL8A1P27658 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL8A1P27658 SAMMSON-213ENST00000641336 1521 ntBASIC6.14□□□□□ -1.43
COL8A1P27658 AMPD1-203ENST00000520113 2375 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL8A1P27658 ZNF587B-201ENST00000442832 3339 ntTSL 2 BASIC6.14□□□□□ -1.43
COL8A1P27658 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC6.14□□□□□ -1.43
COL8A1P27658 CCDC77-210ENST00000540180 1652 ntAPPRIS ALT2 TSL 2 BASIC6.14□□□□□ -1.43
COL8A1P27658 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC6.13□□□□□ -1.43
COL8A1P27658 AC091544.5-201ENST00000620192 3815 ntBASIC6.13□□□□□ -1.43
COL8A1P27658 AL117339.5-201ENST00000640275 3955 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
COL8A1P27658 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL8A1P27658 TCF12-207ENST00000557843 4076 ntAPPRIS ALT1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL8A1P27658 PARN-201ENST00000341484 2100 ntTSL 2 BASIC6.13□□□□□ -1.43
COL8A1P27658 NUDT13-202ENST00000357321 2102 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
COL8A1P27658 FRMD7-203ENST00000464296 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL8A1P27658 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
COL8A1P27658 UMAD1-206ENST00000636849 2157 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
COL8A1P27658 AP002800.1-201ENST00000624982 2225 ntBASIC6.13□□□□□ -1.43
COL8A1P27658 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC6.13□□□□□ -1.43
COL8A1P27658 TMC5-205ENST00000542583 4872 ntAPPRIS ALT2 TSL 2 BASIC6.13□□□□□ -1.43
COL8A1P27658 PVALB-201ENST00000216200 595 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL8A1P27658 ASB4-202ENST00000325885 3825 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL8A1P27658 Y_RNA.25-201ENST00000362528 102 ntBASIC6.13□□□□□ -1.43
COL8A1P27658 Y_RNA.288-201ENST00000364854 92 ntBASIC6.13□□□□□ -1.43
COL8A1P27658 SNORD50B-201ENST00000364995 70 ntBASIC6.13□□□□□ -1.43
COL8A1P27658 SNORD113-1-201ENST00000365321 69 ntBASIC6.13□□□□□ -1.43
COL8A1P27658 RNU6-108P-201ENST00000365558 107 ntBASIC6.13□□□□□ -1.43
COL8A1P27658 RNU6-1040P-201ENST00000383974 107 ntBASIC6.13□□□□□ -1.43
COL8A1P27658 MIR514A2-201ENST00000385131 88 ntBASIC6.13□□□□□ -1.43
COL8A1P27658 MIR514A3-201ENST00000385132 88 ntBASIC6.13□□□□□ -1.43
COL8A1P27658 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC6.13□□□□□ -1.43
COL8A1P27658 GCNT1P4-201ENST00000404096 329 ntBASIC6.13□□□□□ -1.43
COL8A1P27658 AL590143.1-201ENST00000405071 138 ntBASIC6.13□□□□□ -1.43
COL8A1P27658 RPL12P23-201ENST00000405880 490 ntBASIC6.13□□□□□ -1.43
COL8A1P27658 SNORA11C-201ENST00000408532 129 ntBASIC6.13□□□□□ -1.43
COL8A1P27658 RN7SKP266-201ENST00000410232 287 ntBASIC6.13□□□□□ -1.43
COL8A1P27658 RN7SKP207-201ENST00000411204 303 ntBASIC6.13□□□□□ -1.43
COL8A1P27658 AC080125.1-201ENST00000414888 684 ntBASIC6.13□□□□□ -1.43
COL8A1P27658 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC6.13□□□□□ -1.43
COL8A1P27658 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC6.13□□□□□ -1.43
COL8A1P27658 AL807761.1-201ENST00000417622 171 ntBASIC6.13□□□□□ -1.43
COL8A1P27658 RPL12P12-201ENST00000424633 501 ntBASIC6.13□□□□□ -1.43
COL8A1P27658 AC010148.1-201ENST00000427619 707 ntTSL 3 BASIC6.13□□□□□ -1.43
COL8A1P27658 PRH1-201ENST00000428168 603 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
COL8A1P27658 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC6.13□□□□□ -1.43
COL8A1P27658 RPS15AP9-201ENST00000439856 381 ntBASIC6.13□□□□□ -1.43
COL8A1P27658 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC6.13□□□□□ -1.43
COL8A1P27658 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC6.13□□□□□ -1.43
COL8A1P27658 BX248409.1-201ENST00000455497 255 ntBASIC6.13□□□□□ -1.43
COL8A1P27658 UCK2-205ENST00000469256 753 ntTSL 3 BASIC6.13□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 131.5 ms