Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 TXNP6-201ENST00000510190 310 ntBASIC7.5□□□□□ -1.21
COL9A1P20849 RN7SKP2-201ENST00000517003 319 ntBASIC7.5□□□□□ -1.21
COL9A1P20849 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC7.5□□□□□ -1.21
COL9A1P20849 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC7.5□□□□□ -1.21
COL9A1P20849 AC135001.1-201ENST00000544546 283 ntBASIC7.5□□□□□ -1.21
COL9A1P20849 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC7.5□□□□□ -1.21
COL9A1P20849 SNORD39.2-201ENST00000579995 76 ntBASIC7.5□□□□□ -1.21
COL9A1P20849 MIR4502-201ENST00000580432 81 ntBASIC7.5□□□□□ -1.21
COL9A1P20849 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC7.5□□□□□ -1.21
COL9A1P20849 LRMDA-216ENST00000611306 393 ntAPPRIS ALT2 TSL 5 BASIC7.5□□□□□ -1.21
COL9A1P20849 DLEU2_5.1-201ENST00000615567 84 ntBASIC7.5□□□□□ -1.21
COL9A1P20849 AL161420.1-201ENST00000619393 264 ntBASIC7.5□□□□□ -1.21
COL9A1P20849 TAF1-204ENST00000423759 7722 ntAPPRIS ALT2 TSL 5 BASIC7.5□□□□□ -1.21
COL9A1P20849 UNC79-206ENST00000621021 7377 ntAPPRIS P2 TSL 5 BASIC7.5□□□□□ -1.21
COL9A1P20849 DDX10P2-201ENST00000417796 2614 ntBASIC7.5□□□□□ -1.21
COL9A1P20849 ERAP1-202ENST00000443439 4805 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
COL9A1P20849 AC078795.1-201ENST00000602342 3143 ntBASIC7.5□□□□□ -1.21
COL9A1P20849 AC036108.4-201ENST00000611654 2516 ntBASIC7.5□□□□□ -1.21
COL9A1P20849 CD101-201ENST00000256652 3283 ntAPPRIS P1 TSL 2 BASIC7.5□□□□□ -1.21
COL9A1P20849 AC096921.2-201ENST00000561507 1916 ntBASIC7.5□□□□□ -1.21
COL9A1P20849 HEMGN-201ENST00000259456 2192 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
COL9A1P20849 METTL7A-203ENST00000548553 4076 ntAPPRIS P1 TSL 5 BASIC7.5□□□□□ -1.21
COL9A1P20849 TIAM2-208ENST00000461783 6981 ntAPPRIS P1 TSL 2 BASIC7.5□□□□□ -1.21
COL9A1P20849 AL627309.1-201ENST00000466430 2748 ntTSL 5 BASIC7.5□□□□□ -1.21
COL9A1P20849 PRDM2-203ENST00000343137 5797 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
COL9A1P20849 ZNF415-214ENST00000597748 2461 ntTSL 5 BASIC7.5□□□□□ -1.21
COL9A1P20849 BRDT-205ENST00000399546 3357 ntAPPRIS ALT2 TSL 2 BASIC7.5□□□□□ -1.21
COL9A1P20849 KLHL8-203ENST00000498875 5175 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
COL9A1P20849 AC013562.1-201ENST00000519427 1722 ntTSL 2 BASIC7.49□□□□□ -1.21
COL9A1P20849 DLG2-229ENST00000531015 2892 ntTSL 2 BASIC7.49□□□□□ -1.21
COL9A1P20849 GABRA1-202ENST00000393943 4686 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
COL9A1P20849 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC7.49□□□□□ -1.21
COL9A1P20849 BBS12-203ENST00000542236 3431 ntAPPRIS P1 TSL 2 BASIC7.49□□□□□ -1.21
COL9A1P20849 GON4L-217ENST00000615926 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC7.49□□□□□ -1.21
COL9A1P20849 SERPINB8-203ENST00000397985 3477 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
COL9A1P20849 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
COL9A1P20849 TP53BP1-203ENST00000382044 10384 ntAPPRIS ALT2 TSL 1 (best) BASIC7.49□□□□□ -1.21
COL9A1P20849 RORB-202ENST00000396204 2996 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
COL9A1P20849 RPS17-209ENST00000561157 1909 ntTSL 2 BASIC7.49□□□□□ -1.21
COL9A1P20849 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC7.49□□□□□ -1.21
COL9A1P20849 KLHL32-202ENST00000369261 3698 ntAPPRIS P1 TSL 2 BASIC7.49□□□□□ -1.21
COL9A1P20849 DEPDC1B-201ENST00000265036 2499 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
COL9A1P20849 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
COL9A1P20849 RNU6-984P-201ENST00000363236 109 ntBASIC7.49□□□□□ -1.21
COL9A1P20849 RNA5SP238-201ENST00000365464 120 ntBASIC7.49□□□□□ -1.21
COL9A1P20849 SNORA70.5-201ENST00000365519 135 ntBASIC7.49□□□□□ -1.21
COL9A1P20849 Y_RNA.404-201ENST00000383978 102 ntBASIC7.49□□□□□ -1.21
COL9A1P20849 RNU6-187P-201ENST00000384139 106 ntBASIC7.49□□□□□ -1.21
COL9A1P20849 Y_RNA.483-201ENST00000384380 101 ntBASIC7.49□□□□□ -1.21
COL9A1P20849 RPL36P1-201ENST00000419720 225 ntBASIC7.49□□□□□ -1.21
COL9A1P20849 AC097468.2-201ENST00000429343 553 ntTSL 4 BASIC7.49□□□□□ -1.21
COL9A1P20849 RPL23AP74-201ENST00000437246 471 ntBASIC7.49□□□□□ -1.21
COL9A1P20849 AC096775.1-201ENST00000437724 448 ntBASIC7.49□□□□□ -1.21
COL9A1P20849 RPL21P2-201ENST00000440049 481 ntBASIC7.49□□□□□ -1.21
COL9A1P20849 AC114495.1-201ENST00000441274 436 ntBASIC7.49□□□□□ -1.21
COL9A1P20849 AC019185.1-201ENST00000442718 389 ntBASIC7.49□□□□□ -1.21
COL9A1P20849 AC079922.1-201ENST00000443291 359 ntBASIC7.49□□□□□ -1.21
COL9A1P20849 AC114488.2-222ENST00000445166 362 ntTSL 3 BASIC7.49□□□□□ -1.21
COL9A1P20849 MTND6P5-201ENST00000448266 512 ntBASIC7.49□□□□□ -1.21
COL9A1P20849 AC079804.1-201ENST00000461922 436 ntBASIC7.49□□□□□ -1.21
COL9A1P20849 RN7SL610P-201ENST00000463845 291 ntBASIC7.49□□□□□ -1.21
COL9A1P20849 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC7.49□□□□□ -1.21
COL9A1P20849 RPL24-206ENST00000495401 478 ntTSL 2 BASIC7.49□□□□□ -1.21
COL9A1P20849 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC7.49□□□□□ -1.21
COL9A1P20849 RNA5SP518-201ENST00000515957 119 ntBASIC7.49□□□□□ -1.21
COL9A1P20849 RNU4-77P-201ENST00000516692 156 ntBASIC7.49□□□□□ -1.21
COL9A1P20849 Y_RNA.703-201ENST00000516846 111 ntBASIC7.49□□□□□ -1.21
COL9A1P20849 AP001208.1-201ENST00000518612 408 ntTSL 3 BASIC7.49□□□□□ -1.21
COL9A1P20849 IGKV2-29-201ENST00000521304 372 ntBASIC7.49□□□□□ -1.21
COL9A1P20849 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC7.49□□□□□ -1.21
COL9A1P20849 AC005291.1-201ENST00000577743 641 ntTSL 2 BASIC7.49□□□□□ -1.21
COL9A1P20849 GLUD1P8-201ENST00000585063 203 ntBASIC7.49□□□□□ -1.21
COL9A1P20849 RPS11-202ENST00000594493 575 ntTSL 3 BASIC7.49□□□□□ -1.21
COL9A1P20849 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC7.49□□□□□ -1.21
COL9A1P20849 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC7.49□□□□□ -1.21
COL9A1P20849 AC006254.3-201ENST00000603353 884 ntBASIC7.49□□□□□ -1.21
COL9A1P20849 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC7.49□□□□□ -1.21
COL9A1P20849 SDR42E1P1-201ENST00000611327 477 ntBASIC7.49□□□□□ -1.21
COL9A1P20849 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC7.49□□□□□ -1.21
COL9A1P20849 LINC01140-201ENST00000461990 3181 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
COL9A1P20849 ADAM3A-205ENST00000481351 2379 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
COL9A1P20849 KCNJ15-205ENST00000398930 2914 ntAPPRIS P1 TSL 5 BASIC7.49□□□□□ -1.21
COL9A1P20849 RAD17P2-201ENST00000451754 1977 ntBASIC7.49□□□□□ -1.21
COL9A1P20849 RNPC3-208ENST00000533099 3641 ntAPPRIS P2 TSL 5 BASIC7.49□□□□□ -1.21
COL9A1P20849 KIF21A-204ENST00000544797 5040 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
COL9A1P20849 AC069222.1-201ENST00000608028 3360 ntBASIC7.49□□□□□ -1.21
COL9A1P20849 LINC01362-202ENST00000452901 1712 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
COL9A1P20849 NLGN4X-201ENST00000275857 5454 ntAPPRIS P2 TSL 1 (best) BASIC7.49□□□□□ -1.21
COL9A1P20849 SYT1-212ENST00000552744 2718 ntAPPRIS P3 TSL 1 (best) BASIC7.49□□□□□ -1.21
COL9A1P20849 AASS-203ENST00000417368 3163 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
COL9A1P20849 CNTN4-AS1-201ENST00000442749 1640 ntTSL 3 BASIC7.49□□□□□ -1.21
COL9A1P20849 AL671511.1-201ENST00000425033 3458 ntTSL 2 BASIC7.48□□□□□ -1.21
COL9A1P20849 AL359220.1-202ENST00000500036 4499 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
COL9A1P20849 ILDR2-201ENST00000271417 13140 ntAPPRIS P2 TSL 1 (best) BASIC7.48□□□□□ -1.21
COL9A1P20849 RBM22-202ENST00000447771 1386 ntTSL 2 BASIC7.48□□□□□ -1.21
COL9A1P20849 UBN2-201ENST00000473989 14444 ntAPPRIS P1 TSL 2 BASIC7.48□□□□□ -1.21
COL9A1P20849 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC7.48□□□□□ -1.21
COL9A1P20849 LINC01994-201ENST00000496220 1808 ntTSL 2 BASIC7.48□□□□□ -1.21
COL9A1P20849 ARPP21-203ENST00000396482 2416 ntTSL 2 BASIC7.48□□□□□ -1.21
COL9A1P20849 NXF2B-205ENST00000618881 3193 ntTSL 2 BASIC7.48□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 90 ms