Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC5.8□□□□□ -1.48
HLA-DOAP06340 MTND3P19-201ENST00000603825 345 ntBASIC5.8□□□□□ -1.48
HLA-DOAP06340 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC5.8□□□□□ -1.48
HLA-DOAP06340 AP000346.3-201ENST00000622821 210 ntBASIC5.8□□□□□ -1.48
HLA-DOAP06340 AC092608.3-201ENST00000625017 386 ntBASIC5.8□□□□□ -1.48
HLA-DOAP06340 AL049536.1-201ENST00000625043 744 ntBASIC5.8□□□□□ -1.48
HLA-DOAP06340 LINC02211-204ENST00000642024 1070 ntBASIC5.8□□□□□ -1.48
HLA-DOAP06340 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
HLA-DOAP06340 A2MP1-204ENST00000566278 4130 ntBASIC5.8□□□□□ -1.48
HLA-DOAP06340 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC5.8□□□□□ -1.48
HLA-DOAP06340 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
HLA-DOAP06340 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
HLA-DOAP06340 AC093297.3-201ENST00000607056 2517 ntBASIC5.8□□□□□ -1.48
HLA-DOAP06340 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC5.8□□□□□ -1.48
HLA-DOAP06340 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
HLA-DOAP06340 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
HLA-DOAP06340 MTND4P4-201ENST00000439033 1366 ntBASIC5.8□□□□□ -1.48
HLA-DOAP06340 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
HLA-DOAP06340 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
HLA-DOAP06340 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC5.79□□□□□ -1.48
HLA-DOAP06340 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC5.79□□□□□ -1.48
HLA-DOAP06340 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
HLA-DOAP06340 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
HLA-DOAP06340 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC5.79□□□□□ -1.48
HLA-DOAP06340 MTND5P11-201ENST00000511037 1812 ntBASIC5.79□□□□□ -1.48
HLA-DOAP06340 VEZF1-204ENST00000584396 2342 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
HLA-DOAP06340 TTC6-202ENST00000382320 1972 ntTSL 2 BASIC5.79□□□□□ -1.48
HLA-DOAP06340 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC5.79□□□□□ -1.48
HLA-DOAP06340 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC5.79□□□□□ -1.48
HLA-DOAP06340 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC5.79□□□□□ -1.48
HLA-DOAP06340 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
HLA-DOAP06340 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC5.79□□□□□ -1.48
HLA-DOAP06340 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC5.79□□□□□ -1.48
HLA-DOAP06340 Y_RNA.472-201ENST00000384322 102 ntBASIC5.79□□□□□ -1.48
HLA-DOAP06340 AL357515.1-201ENST00000402967 542 ntBASIC5.79□□□□□ -1.48
HLA-DOAP06340 XKRYP4-201ENST00000414395 483 ntBASIC5.79□□□□□ -1.48
HLA-DOAP06340 AL008987.1-201ENST00000415528 237 ntBASIC5.79□□□□□ -1.48
HLA-DOAP06340 GTF2IP3-201ENST00000433887 494 ntBASIC5.79□□□□□ -1.48
HLA-DOAP06340 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC5.79□□□□□ -1.48
HLA-DOAP06340 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC5.79□□□□□ -1.48
HLA-DOAP06340 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC5.79□□□□□ -1.48
HLA-DOAP06340 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC5.79□□□□□ -1.48
HLA-DOAP06340 RPL6P5-201ENST00000445678 828 ntBASIC5.79□□□□□ -1.48
HLA-DOAP06340 AC000111.2-201ENST00000448200 210 ntBASIC5.79□□□□□ -1.48
HLA-DOAP06340 XKRYP5-201ENST00000449659 483 ntBASIC5.79□□□□□ -1.48
HLA-DOAP06340 USP9YP25-201ENST00000457708 443 ntBASIC5.79□□□□□ -1.48
HLA-DOAP06340 RPS17P2-201ENST00000461663 408 ntBASIC5.79□□□□□ -1.48
HLA-DOAP06340 AC126121.1-201ENST00000482313 553 ntBASIC5.79□□□□□ -1.48
HLA-DOAP06340 RPS3AP22-201ENST00000488297 769 ntBASIC5.79□□□□□ -1.48
HLA-DOAP06340 RPL23AP72-201ENST00000492447 435 ntBASIC5.79□□□□□ -1.48
HLA-DOAP06340 RPL21P131-201ENST00000497298 483 ntBASIC5.79□□□□□ -1.48
HLA-DOAP06340 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC5.79□□□□□ -1.48
HLA-DOAP06340 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC5.79□□□□□ -1.48
HLA-DOAP06340 AC097486.1-201ENST00000515331 210 ntBASIC5.79□□□□□ -1.48
HLA-DOAP06340 RNA5SP392-201ENST00000516905 112 ntBASIC5.79□□□□□ -1.48
HLA-DOAP06340 AC090819.1-201ENST00000523800 1111 ntBASIC5.79□□□□□ -1.48
HLA-DOAP06340 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC5.79□□□□□ -1.48
HLA-DOAP06340 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC5.79□□□□□ -1.48
HLA-DOAP06340 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
HLA-DOAP06340 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC5.79□□□□□ -1.48
HLA-DOAP06340 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
HLA-DOAP06340 AC021483.2-201ENST00000567415 758 ntBASIC5.79□□□□□ -1.48
HLA-DOAP06340 AC106734.1-201ENST00000568646 663 ntBASIC5.79□□□□□ -1.48
HLA-DOAP06340 AL158042.1-201ENST00000605338 460 ntBASIC5.79□□□□□ -1.48
HLA-DOAP06340 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC5.79□□□□□ -1.48
HLA-DOAP06340 AC007497.1-201ENST00000610421 561 ntBASIC5.79□□□□□ -1.48
HLA-DOAP06340 FAM27B-201ENST00000610601 213 ntBASIC5.79□□□□□ -1.48
HLA-DOAP06340 AC011939.3-201ENST00000613686 466 ntBASIC5.79□□□□□ -1.48
HLA-DOAP06340 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC5.79□□□□□ -1.48
HLA-DOAP06340 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
HLA-DOAP06340 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
HLA-DOAP06340 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
HLA-DOAP06340 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
HLA-DOAP06340 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC5.79□□□□□ -1.48
HLA-DOAP06340 SAMM50P1-201ENST00000455403 1399 ntBASIC5.79□□□□□ -1.48
HLA-DOAP06340 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
HLA-DOAP06340 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC5.79□□□□□ -1.48
HLA-DOAP06340 AC003985.2-201ENST00000562268 1669 ntBASIC5.79□□□□□ -1.48
HLA-DOAP06340 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC5.78□□□□□ -1.48
HLA-DOAP06340 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
HLA-DOAP06340 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
HLA-DOAP06340 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC5.78□□□□□ -1.48
HLA-DOAP06340 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC5.78□□□□□ -1.48
HLA-DOAP06340 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
HLA-DOAP06340 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
HLA-DOAP06340 MTHFD2P5-201ENST00000320415 844 ntBASIC5.78□□□□□ -1.48
HLA-DOAP06340 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
HLA-DOAP06340 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
HLA-DOAP06340 RNA5SP505-201ENST00000364748 108 ntBASIC5.78□□□□□ -1.48
HLA-DOAP06340 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
HLA-DOAP06340 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC5.78□□□□□ -1.48
HLA-DOAP06340 RNU6-31P-201ENST00000384388 108 ntBASIC5.78□□□□□ -1.48
HLA-DOAP06340 SNORD116-12-201ENST00000384468 92 ntBASIC5.78□□□□□ -1.48
HLA-DOAP06340 RNU6-636P-201ENST00000384598 107 ntBASIC5.78□□□□□ -1.48
HLA-DOAP06340 MCTS2P-201ENST00000394552 546 ntBASIC5.78□□□□□ -1.48
HLA-DOAP06340 AP002784.2-201ENST00000397300 549 ntBASIC5.78□□□□□ -1.48
HLA-DOAP06340 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
HLA-DOAP06340 AC016397.1-201ENST00000412463 242 ntBASIC5.78□□□□□ -1.48
HLA-DOAP06340 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC5.78□□□□□ -1.48
HLA-DOAP06340 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC5.78□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 86.3 ms