Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
HIF3AQ9Y2N7 AP006587.1-201ENST00000534129 1502 ntBASIC17.52■□□□□ 0.4
HIF3AQ9Y2N7 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HIF3AQ9Y2N7 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
HIF3AQ9Y2N7 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
HIF3AQ9Y2N7 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
HIF3AQ9Y2N7 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC17.52■□□□□ 0.4
HIF3AQ9Y2N7 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HIF3AQ9Y2N7 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
HIF3AQ9Y2N7 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
HIF3AQ9Y2N7 AC069152.1-201ENST00000438030 544 ntBASIC17.52■□□□□ 0.4
HIF3AQ9Y2N7 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC17.52■□□□□ 0.4
HIF3AQ9Y2N7 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC17.52■□□□□ 0.4
HIF3AQ9Y2N7 AC142086.2-201ENST00000569753 217 ntBASIC17.52■□□□□ 0.4
HIF3AQ9Y2N7 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC17.52■□□□□ 0.4
HIF3AQ9Y2N7 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC17.52■□□□□ 0.4
HIF3AQ9Y2N7 AC120498.8-201ENST00000614275 531 ntBASIC17.52■□□□□ 0.4
HIF3AQ9Y2N7 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
HIF3AQ9Y2N7 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HIF3AQ9Y2N7 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC17.52■□□□□ 0.4
HIF3AQ9Y2N7 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
HIF3AQ9Y2N7 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
HIF3AQ9Y2N7 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC17.52■□□□□ 0.39
HIF3AQ9Y2N7 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
HIF3AQ9Y2N7 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
HIF3AQ9Y2N7 TNXA-203ENST00000507684 2038 ntBASIC17.52■□□□□ 0.39
HIF3AQ9Y2N7 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
HIF3AQ9Y2N7 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
HIF3AQ9Y2N7 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HIF3AQ9Y2N7 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HIF3AQ9Y2N7 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HIF3AQ9Y2N7 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC17.51■□□□□ 0.39
HIF3AQ9Y2N7 NME1-207ENST00000480143 964 ntTSL 2 BASIC17.51■□□□□ 0.39
HIF3AQ9Y2N7 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC17.51■□□□□ 0.39
HIF3AQ9Y2N7 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC17.51■□□□□ 0.39
HIF3AQ9Y2N7 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HIF3AQ9Y2N7 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC17.51■□□□□ 0.39
HIF3AQ9Y2N7 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC17.51■□□□□ 0.39
HIF3AQ9Y2N7 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC17.51■□□□□ 0.39
HIF3AQ9Y2N7 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HIF3AQ9Y2N7 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HIF3AQ9Y2N7 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HIF3AQ9Y2N7 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HIF3AQ9Y2N7 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
HIF3AQ9Y2N7 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC17.51■□□□□ 0.39
HIF3AQ9Y2N7 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
HIF3AQ9Y2N7 LINC01465-201ENST00000408887 1940 ntBASIC17.51■□□□□ 0.39
HIF3AQ9Y2N7 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
HIF3AQ9Y2N7 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HIF3AQ9Y2N7 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC17.5■□□□□ 0.39
HIF3AQ9Y2N7 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HIF3AQ9Y2N7 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC17.5■□□□□ 0.39
HIF3AQ9Y2N7 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HIF3AQ9Y2N7 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HIF3AQ9Y2N7 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HIF3AQ9Y2N7 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HIF3AQ9Y2N7 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HIF3AQ9Y2N7 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HIF3AQ9Y2N7 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HIF3AQ9Y2N7 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
HIF3AQ9Y2N7 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HIF3AQ9Y2N7 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HIF3AQ9Y2N7 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
HIF3AQ9Y2N7 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
HIF3AQ9Y2N7 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC17.5■□□□□ 0.39
HIF3AQ9Y2N7 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC17.5■□□□□ 0.39
HIF3AQ9Y2N7 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HIF3AQ9Y2N7 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HIF3AQ9Y2N7 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC17.5■□□□□ 0.39
HIF3AQ9Y2N7 AC104771.1-201ENST00000603335 964 ntBASIC17.5■□□□□ 0.39
HIF3AQ9Y2N7 AL121829.2-201ENST00000620908 328 ntBASIC17.5■□□□□ 0.39
HIF3AQ9Y2N7 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC17.5■□□□□ 0.39
HIF3AQ9Y2N7 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HIF3AQ9Y2N7 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HIF3AQ9Y2N7 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC17.5■□□□□ 0.39
HIF3AQ9Y2N7 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
HIF3AQ9Y2N7 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HIF3AQ9Y2N7 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC17.5■□□□□ 0.39
HIF3AQ9Y2N7 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC17.5■□□□□ 0.39
HIF3AQ9Y2N7 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HIF3AQ9Y2N7 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HIF3AQ9Y2N7 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HIF3AQ9Y2N7 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HIF3AQ9Y2N7 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HIF3AQ9Y2N7 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
HIF3AQ9Y2N7 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC17.49■□□□□ 0.39
HIF3AQ9Y2N7 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
HIF3AQ9Y2N7 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HIF3AQ9Y2N7 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HIF3AQ9Y2N7 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HIF3AQ9Y2N7 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HIF3AQ9Y2N7 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
HIF3AQ9Y2N7 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
HIF3AQ9Y2N7 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
HIF3AQ9Y2N7 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC17.49■□□□□ 0.39
HIF3AQ9Y2N7 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC17.49■□□□□ 0.39
HIF3AQ9Y2N7 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC17.49■□□□□ 0.39
HIF3AQ9Y2N7 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HIF3AQ9Y2N7 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
HIF3AQ9Y2N7 SOX15-203ENST00000570788 1093 ntBASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms