Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC18.79■□□□□ 0.6
CUEDC1Q9NWM3 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CUEDC1Q9NWM3 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CUEDC1Q9NWM3 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CUEDC1Q9NWM3 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC18.79■□□□□ 0.6
CUEDC1Q9NWM3 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CUEDC1Q9NWM3 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC18.79■□□□□ 0.6
CUEDC1Q9NWM3 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CUEDC1Q9NWM3 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CUEDC1Q9NWM3 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.79■□□□□ 0.6
CUEDC1Q9NWM3 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CUEDC1Q9NWM3 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.79■□□□□ 0.6
CUEDC1Q9NWM3 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CUEDC1Q9NWM3 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CUEDC1Q9NWM3 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC18.79■□□□□ 0.6
CUEDC1Q9NWM3 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC18.79■□□□□ 0.6
CUEDC1Q9NWM3 SPIB-206ENST00000596074 847 ntTSL 2 BASIC18.79■□□□□ 0.6
CUEDC1Q9NWM3 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC18.79■□□□□ 0.6
CUEDC1Q9NWM3 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC18.79■□□□□ 0.6
CUEDC1Q9NWM3 AC004264.1-201ENST00000608354 794 ntBASIC18.79■□□□□ 0.6
CUEDC1Q9NWM3 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CUEDC1Q9NWM3 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CUEDC1Q9NWM3 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
CUEDC1Q9NWM3 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CUEDC1Q9NWM3 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CUEDC1Q9NWM3 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC18.79■□□□□ 0.6
CUEDC1Q9NWM3 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CUEDC1Q9NWM3 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC18.79■□□□□ 0.6
CUEDC1Q9NWM3 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CUEDC1Q9NWM3 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.78■□□□□ 0.6
CUEDC1Q9NWM3 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CUEDC1Q9NWM3 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CUEDC1Q9NWM3 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CUEDC1Q9NWM3 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC18.78■□□□□ 0.6
CUEDC1Q9NWM3 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.78■□□□□ 0.6
CUEDC1Q9NWM3 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
CUEDC1Q9NWM3 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.78■□□□□ 0.6
CUEDC1Q9NWM3 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CUEDC1Q9NWM3 KRT16P5-201ENST00000455284 522 ntBASIC18.78■□□□□ 0.6
CUEDC1Q9NWM3 SNORA78-201ENST00000459373 127 ntBASIC18.78■□□□□ 0.6
CUEDC1Q9NWM3 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CUEDC1Q9NWM3 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
CUEDC1Q9NWM3 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC18.78■□□□□ 0.6
CUEDC1Q9NWM3 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
CUEDC1Q9NWM3 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CUEDC1Q9NWM3 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
CUEDC1Q9NWM3 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CUEDC1Q9NWM3 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CUEDC1Q9NWM3 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.78■□□□□ 0.6
CUEDC1Q9NWM3 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CUEDC1Q9NWM3 AC007952.6-201ENST00000573168 2673 ntBASIC18.77■□□□□ 0.6
CUEDC1Q9NWM3 AC003957.1-201ENST00000625108 2673 ntBASIC18.77■□□□□ 0.6
CUEDC1Q9NWM3 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.77■□□□□ 0.6
CUEDC1Q9NWM3 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CUEDC1Q9NWM3 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC18.77■□□□□ 0.6
CUEDC1Q9NWM3 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CUEDC1Q9NWM3 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CUEDC1Q9NWM3 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CUEDC1Q9NWM3 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CUEDC1Q9NWM3 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CUEDC1Q9NWM3 KRT8P8-201ENST00000434750 1448 ntBASIC18.77■□□□□ 0.6
CUEDC1Q9NWM3 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CUEDC1Q9NWM3 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CUEDC1Q9NWM3 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CUEDC1Q9NWM3 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CUEDC1Q9NWM3 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC18.77■□□□□ 0.6
CUEDC1Q9NWM3 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
CUEDC1Q9NWM3 POLI-202ENST00000406285 2030 ntTSL 2 BASIC18.77■□□□□ 0.6
CUEDC1Q9NWM3 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC18.77■□□□□ 0.6
CUEDC1Q9NWM3 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CUEDC1Q9NWM3 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CUEDC1Q9NWM3 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC18.77■□□□□ 0.6
CUEDC1Q9NWM3 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
CUEDC1Q9NWM3 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CUEDC1Q9NWM3 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC18.76■□□□□ 0.59
CUEDC1Q9NWM3 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CUEDC1Q9NWM3 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CUEDC1Q9NWM3 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CUEDC1Q9NWM3 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC18.76■□□□□ 0.59
CUEDC1Q9NWM3 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CUEDC1Q9NWM3 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
CUEDC1Q9NWM3 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC18.76■□□□□ 0.59
CUEDC1Q9NWM3 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
CUEDC1Q9NWM3 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CUEDC1Q9NWM3 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.76■□□□□ 0.59
CUEDC1Q9NWM3 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC18.76■□□□□ 0.59
CUEDC1Q9NWM3 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CUEDC1Q9NWM3 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.76■□□□□ 0.59
CUEDC1Q9NWM3 KRT18P21-201ENST00000515767 1272 ntBASIC18.76■□□□□ 0.59
CUEDC1Q9NWM3 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
CUEDC1Q9NWM3 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CUEDC1Q9NWM3 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC18.76■□□□□ 0.59
CUEDC1Q9NWM3 Z99916.2-201ENST00000604037 246 ntBASIC18.76■□□□□ 0.59
CUEDC1Q9NWM3 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC18.76■□□□□ 0.59
CUEDC1Q9NWM3 CABP2-204ENST00000636477 941 ntTSL 5 BASIC18.76■□□□□ 0.59
CUEDC1Q9NWM3 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
CUEDC1Q9NWM3 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
CUEDC1Q9NWM3 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.76■□□□□ 0.59
CUEDC1Q9NWM3 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
CUEDC1Q9NWM3 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms