Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC18.87■□□□□ 0.61
CCDC28BQ9BUN5 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC18.87■□□□□ 0.61
CCDC28BQ9BUN5 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC18.87■□□□□ 0.61
CCDC28BQ9BUN5 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.87■□□□□ 0.61
CCDC28BQ9BUN5 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC28BQ9BUN5 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
CCDC28BQ9BUN5 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC18.87■□□□□ 0.61
CCDC28BQ9BUN5 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
CCDC28BQ9BUN5 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC28BQ9BUN5 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC28BQ9BUN5 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC28BQ9BUN5 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC28BQ9BUN5 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC28BQ9BUN5 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC28BQ9BUN5 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC18.86■□□□□ 0.61
CCDC28BQ9BUN5 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
CCDC28BQ9BUN5 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC28BQ9BUN5 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
CCDC28BQ9BUN5 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC28BQ9BUN5 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC28BQ9BUN5 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.86■□□□□ 0.61
CCDC28BQ9BUN5 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC28BQ9BUN5 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC28BQ9BUN5 AC116351.2-201ENST00000606540 1585 ntBASIC18.86■□□□□ 0.61
CCDC28BQ9BUN5 AC093525.10-201ENST00000625130 1569 ntBASIC18.86■□□□□ 0.61
CCDC28BQ9BUN5 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC28BQ9BUN5 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC28BQ9BUN5 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC18.86■□□□□ 0.61
CCDC28BQ9BUN5 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC18.86■□□□□ 0.61
CCDC28BQ9BUN5 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC28BQ9BUN5 KRT18P11-201ENST00000435214 1283 ntBASIC18.86■□□□□ 0.61
CCDC28BQ9BUN5 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC18.86■□□□□ 0.61
CCDC28BQ9BUN5 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC18.86■□□□□ 0.61
CCDC28BQ9BUN5 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC18.86■□□□□ 0.61
CCDC28BQ9BUN5 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC18.86■□□□□ 0.61
CCDC28BQ9BUN5 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC28BQ9BUN5 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
CCDC28BQ9BUN5 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC18.86■□□□□ 0.61
CCDC28BQ9BUN5 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
CCDC28BQ9BUN5 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC28BQ9BUN5 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.86■□□□□ 0.61
CCDC28BQ9BUN5 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.86■□□□□ 0.61
CCDC28BQ9BUN5 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC28BQ9BUN5 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC28BQ9BUN5 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.86■□□□□ 0.61
CCDC28BQ9BUN5 AL031598.1-201ENST00000561511 1773 ntBASIC18.86■□□□□ 0.61
CCDC28BQ9BUN5 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC28BQ9BUN5 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC28BQ9BUN5 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
CCDC28BQ9BUN5 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC28BQ9BUN5 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
CCDC28BQ9BUN5 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC28BQ9BUN5 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC28BQ9BUN5 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC28BQ9BUN5 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC28BQ9BUN5 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.85■□□□□ 0.61
CCDC28BQ9BUN5 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC28BQ9BUN5 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC18.85■□□□□ 0.61
CCDC28BQ9BUN5 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC18.85■□□□□ 0.61
CCDC28BQ9BUN5 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC28BQ9BUN5 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC28BQ9BUN5 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
CCDC28BQ9BUN5 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC28BQ9BUN5 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC28BQ9BUN5 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC18.85■□□□□ 0.61
CCDC28BQ9BUN5 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
CCDC28BQ9BUN5 C2orf69P4-201ENST00000565394 541 ntBASIC18.85■□□□□ 0.61
CCDC28BQ9BUN5 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC18.85■□□□□ 0.61
CCDC28BQ9BUN5 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC28BQ9BUN5 AC009113.1-201ENST00000570267 2443 ntBASIC18.85■□□□□ 0.61
CCDC28BQ9BUN5 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC28BQ9BUN5 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
CCDC28BQ9BUN5 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC28BQ9BUN5 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC28BQ9BUN5 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC28BQ9BUN5 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC28BQ9BUN5 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
CCDC28BQ9BUN5 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC28BQ9BUN5 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC18.84■□□□□ 0.61
CCDC28BQ9BUN5 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
CCDC28BQ9BUN5 AC068338.2-201ENST00000563278 1430 ntBASIC18.84■□□□□ 0.61
CCDC28BQ9BUN5 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC28BQ9BUN5 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC28BQ9BUN5 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
CCDC28BQ9BUN5 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC28BQ9BUN5 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.84■□□□□ 0.61
CCDC28BQ9BUN5 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC28BQ9BUN5 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC28BQ9BUN5 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC28BQ9BUN5 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC28BQ9BUN5 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
CCDC28BQ9BUN5 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC18.84■□□□□ 0.61
CCDC28BQ9BUN5 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC28BQ9BUN5 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC18.84■□□□□ 0.61
CCDC28BQ9BUN5 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC28BQ9BUN5 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC28BQ9BUN5 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.84■□□□□ 0.61
CCDC28BQ9BUN5 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC28BQ9BUN5 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC18.84■□□□□ 0.61
CCDC28BQ9BUN5 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms