Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PTCHD1Q96NR3 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
PTCHD1Q96NR3 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.32■□□□□ 0.52
PTCHD1Q96NR3 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
PTCHD1Q96NR3 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC18.32■□□□□ 0.52
PTCHD1Q96NR3 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC18.32■□□□□ 0.52
PTCHD1Q96NR3 KRT8P8-201ENST00000434750 1448 ntBASIC18.32■□□□□ 0.52
PTCHD1Q96NR3 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PTCHD1Q96NR3 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PTCHD1Q96NR3 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PTCHD1Q96NR3 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.32■□□□□ 0.52
PTCHD1Q96NR3 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PTCHD1Q96NR3 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.32■□□□□ 0.52
PTCHD1Q96NR3 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
PTCHD1Q96NR3 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PTCHD1Q96NR3 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PTCHD1Q96NR3 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC18.32■□□□□ 0.52
PTCHD1Q96NR3 SAPCD2P4-201ENST00000424595 1171 ntBASIC18.32■□□□□ 0.52
PTCHD1Q96NR3 FDX2-207ENST00000494368 584 ntTSL 4 BASIC18.32■□□□□ 0.52
PTCHD1Q96NR3 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC18.32■□□□□ 0.52
PTCHD1Q96NR3 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PTCHD1Q96NR3 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC18.32■□□□□ 0.52
PTCHD1Q96NR3 AC073195.1-201ENST00000607241 877 ntBASIC18.32■□□□□ 0.52
PTCHD1Q96NR3 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PTCHD1Q96NR3 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PTCHD1Q96NR3 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
PTCHD1Q96NR3 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC18.32■□□□□ 0.52
PTCHD1Q96NR3 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PTCHD1Q96NR3 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PTCHD1Q96NR3 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PTCHD1Q96NR3 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PTCHD1Q96NR3 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PTCHD1Q96NR3 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC18.31■□□□□ 0.52
PTCHD1Q96NR3 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PTCHD1Q96NR3 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
PTCHD1Q96NR3 SNORA78-201ENST00000459373 127 ntBASIC18.31■□□□□ 0.52
PTCHD1Q96NR3 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PTCHD1Q96NR3 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PTCHD1Q96NR3 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PTCHD1Q96NR3 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC18.31■□□□□ 0.52
PTCHD1Q96NR3 AL353708.3-201ENST00000610272 989 ntBASIC18.31■□□□□ 0.52
PTCHD1Q96NR3 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PTCHD1Q96NR3 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC18.31■□□□□ 0.52
PTCHD1Q96NR3 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC18.31■□□□□ 0.52
PTCHD1Q96NR3 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.31■□□□□ 0.52
PTCHD1Q96NR3 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
PTCHD1Q96NR3 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PTCHD1Q96NR3 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PTCHD1Q96NR3 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC18.31■□□□□ 0.52
PTCHD1Q96NR3 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC18.31■□□□□ 0.52
PTCHD1Q96NR3 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PTCHD1Q96NR3 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
PTCHD1Q96NR3 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
PTCHD1Q96NR3 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PTCHD1Q96NR3 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PTCHD1Q96NR3 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
PTCHD1Q96NR3 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
PTCHD1Q96NR3 NIFKP9-201ENST00000419265 221 ntBASIC18.3■□□□□ 0.52
PTCHD1Q96NR3 AL596275.1-201ENST00000423464 877 ntBASIC18.3■□□□□ 0.52
PTCHD1Q96NR3 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC18.3■□□□□ 0.52
PTCHD1Q96NR3 AC113410.3-201ENST00000623366 203 ntBASIC18.3■□□□□ 0.52
PTCHD1Q96NR3 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PTCHD1Q96NR3 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC18.3■□□□□ 0.52
PTCHD1Q96NR3 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
PTCHD1Q96NR3 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC18.3■□□□□ 0.52
PTCHD1Q96NR3 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
PTCHD1Q96NR3 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PTCHD1Q96NR3 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PTCHD1Q96NR3 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
PTCHD1Q96NR3 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PTCHD1Q96NR3 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PTCHD1Q96NR3 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
PTCHD1Q96NR3 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PTCHD1Q96NR3 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC18.3■□□□□ 0.52
PTCHD1Q96NR3 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTCHD1Q96NR3 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PTCHD1Q96NR3 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTCHD1Q96NR3 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTCHD1Q96NR3 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTCHD1Q96NR3 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC18.29■□□□□ 0.52
PTCHD1Q96NR3 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTCHD1Q96NR3 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTCHD1Q96NR3 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTCHD1Q96NR3 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTCHD1Q96NR3 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTCHD1Q96NR3 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTCHD1Q96NR3 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
PTCHD1Q96NR3 FAM197Y1-201ENST00000421178 764 ntBASIC18.29■□□□□ 0.52
PTCHD1Q96NR3 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTCHD1Q96NR3 KSR1P1-201ENST00000446298 240 ntBASIC18.29■□□□□ 0.52
PTCHD1Q96NR3 MIR4497-201ENST00000583208 89 ntBASIC18.29■□□□□ 0.52
PTCHD1Q96NR3 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC18.29■□□□□ 0.52
PTCHD1Q96NR3 CD177P1-201ENST00000606252 935 ntBASIC18.29■□□□□ 0.52
PTCHD1Q96NR3 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC18.29■□□□□ 0.52
PTCHD1Q96NR3 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC18.29■□□□□ 0.52
PTCHD1Q96NR3 CR392000.1-201ENST00000624770 1228 ntBASIC18.29■□□□□ 0.52
PTCHD1Q96NR3 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTCHD1Q96NR3 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTCHD1Q96NR3 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTCHD1Q96NR3 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms