Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC24.55■■□□□ 1.52
RC3H1Q5TC82 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC24.55■■□□□ 1.52
RC3H1Q5TC82 AC012313.10-201ENST00000623509 926 ntBASIC24.55■■□□□ 1.52
RC3H1Q5TC82 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC24.55■■□□□ 1.52
RC3H1Q5TC82 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
RC3H1Q5TC82 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC24.55■■□□□ 1.52
RC3H1Q5TC82 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
RC3H1Q5TC82 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC24.54■■□□□ 1.52
RC3H1Q5TC82 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC24.54■■□□□ 1.52
RC3H1Q5TC82 GOLGA2P11-201ENST00000562660 1621 ntBASIC24.54■■□□□ 1.52
RC3H1Q5TC82 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
RC3H1Q5TC82 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
RC3H1Q5TC82 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
RC3H1Q5TC82 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
RC3H1Q5TC82 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
RC3H1Q5TC82 SPDYE15P-201ENST00000424157 909 ntBASIC24.54■■□□□ 1.52
RC3H1Q5TC82 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC24.54■■□□□ 1.52
RC3H1Q5TC82 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC24.54■■□□□ 1.52
RC3H1Q5TC82 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC24.54■■□□□ 1.52
RC3H1Q5TC82 BCL10-202ENST00000620248 774 ntTSL 5 BASIC24.54■■□□□ 1.52
RC3H1Q5TC82 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
RC3H1Q5TC82 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
RC3H1Q5TC82 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
RC3H1Q5TC82 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
RC3H1Q5TC82 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC24.53■■□□□ 1.52
RC3H1Q5TC82 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
RC3H1Q5TC82 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC24.53■■□□□ 1.52
RC3H1Q5TC82 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
RC3H1Q5TC82 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC24.53■■□□□ 1.52
RC3H1Q5TC82 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
RC3H1Q5TC82 FGF14-AS2-201ENST00000606448 1074 ntBASIC24.53■■□□□ 1.52
RC3H1Q5TC82 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
RC3H1Q5TC82 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
RC3H1Q5TC82 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
RC3H1Q5TC82 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
RC3H1Q5TC82 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC24.52■■□□□ 1.52
RC3H1Q5TC82 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC24.52■■□□□ 1.52
RC3H1Q5TC82 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC24.52■■□□□ 1.52
RC3H1Q5TC82 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC24.52■■□□□ 1.52
RC3H1Q5TC82 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
RC3H1Q5TC82 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC24.52■■□□□ 1.52
RC3H1Q5TC82 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC24.52■■□□□ 1.52
RC3H1Q5TC82 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC24.52■■□□□ 1.52
RC3H1Q5TC82 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC24.52■■□□□ 1.52
RC3H1Q5TC82 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC24.52■■□□□ 1.52
RC3H1Q5TC82 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
RC3H1Q5TC82 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC24.52■■□□□ 1.52
RC3H1Q5TC82 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC24.52■■□□□ 1.52
RC3H1Q5TC82 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC24.52■■□□□ 1.52
RC3H1Q5TC82 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
RC3H1Q5TC82 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
RC3H1Q5TC82 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC24.51■■□□□ 1.51
RC3H1Q5TC82 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
RC3H1Q5TC82 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
RC3H1Q5TC82 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
RC3H1Q5TC82 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC24.51■■□□□ 1.51
RC3H1Q5TC82 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC24.51■■□□□ 1.51
RC3H1Q5TC82 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC24.51■■□□□ 1.51
RC3H1Q5TC82 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC24.51■■□□□ 1.51
RC3H1Q5TC82 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC24.51■■□□□ 1.51
RC3H1Q5TC82 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
RC3H1Q5TC82 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
RC3H1Q5TC82 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
RC3H1Q5TC82 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
RC3H1Q5TC82 AC026310.3-201ENST00000625186 2373 ntBASIC24.5■■□□□ 1.51
RC3H1Q5TC82 HBZP1-201ENST00000354915 429 ntBASIC24.5■■□□□ 1.51
RC3H1Q5TC82 TSPY21P-201ENST00000433481 731 ntBASIC24.5■■□□□ 1.51
RC3H1Q5TC82 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC24.5■■□□□ 1.51
RC3H1Q5TC82 TSPY23P-201ENST00000440136 739 ntBASIC24.5■■□□□ 1.51
RC3H1Q5TC82 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
RC3H1Q5TC82 MIR4674-201ENST00000582457 87 ntBASIC24.5■■□□□ 1.51
RC3H1Q5TC82 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC24.5■■□□□ 1.51
RC3H1Q5TC82 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC24.5■■□□□ 1.51
RC3H1Q5TC82 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC24.5■■□□□ 1.51
RC3H1Q5TC82 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
RC3H1Q5TC82 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC24.49■■□□□ 1.51
RC3H1Q5TC82 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC24.49■■□□□ 1.51
RC3H1Q5TC82 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC24.49■■□□□ 1.51
RC3H1Q5TC82 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC24.49■■□□□ 1.51
RC3H1Q5TC82 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC24.49■■□□□ 1.51
RC3H1Q5TC82 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
RC3H1Q5TC82 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
RC3H1Q5TC82 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
RC3H1Q5TC82 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
RC3H1Q5TC82 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC24.49■■□□□ 1.51
RC3H1Q5TC82 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
RC3H1Q5TC82 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
RC3H1Q5TC82 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC24.49■■□□□ 1.51
RC3H1Q5TC82 IRF5-214ENST00000613821 595 ntTSL 5 BASIC24.49■■□□□ 1.51
RC3H1Q5TC82 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
RC3H1Q5TC82 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
RC3H1Q5TC82 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC24.49■■□□□ 1.51
RC3H1Q5TC82 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
RC3H1Q5TC82 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
RC3H1Q5TC82 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
RC3H1Q5TC82 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
RC3H1Q5TC82 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC24.48■■□□□ 1.51
RC3H1Q5TC82 ILF2-202ENST00000368681 726 ntTSL 2 BASIC24.48■■□□□ 1.51
RC3H1Q5TC82 BUB3-202ENST00000368859 667 ntTSL 3 BASIC24.48■■□□□ 1.51
RC3H1Q5TC82 GAD2-202ENST00000376248 680 ntTSL 5 BASIC24.48■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms