Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 MIR718-201ENST00000390190 70 ntBASIC18.99■□□□□ 0.63
PTCHD3Q3KNS1 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC18.99■□□□□ 0.63
PTCHD3Q3KNS1 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC18.99■□□□□ 0.63
PTCHD3Q3KNS1 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC18.99■□□□□ 0.63
PTCHD3Q3KNS1 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC18.99■□□□□ 0.63
PTCHD3Q3KNS1 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC18.99■□□□□ 0.63
PTCHD3Q3KNS1 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC18.99■□□□□ 0.63
PTCHD3Q3KNS1 Z99916.2-201ENST00000604037 246 ntBASIC18.99■□□□□ 0.63
PTCHD3Q3KNS1 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PTCHD3Q3KNS1 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PTCHD3Q3KNS1 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
PTCHD3Q3KNS1 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
PTCHD3Q3KNS1 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC18.99■□□□□ 0.63
PTCHD3Q3KNS1 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
PTCHD3Q3KNS1 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
PTCHD3Q3KNS1 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.99■□□□□ 0.63
PTCHD3Q3KNS1 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PTCHD3Q3KNS1 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTCHD3Q3KNS1 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
PTCHD3Q3KNS1 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC18.98■□□□□ 0.63
PTCHD3Q3KNS1 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC18.98■□□□□ 0.63
PTCHD3Q3KNS1 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
PTCHD3Q3KNS1 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
PTCHD3Q3KNS1 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC18.98■□□□□ 0.63
PTCHD3Q3KNS1 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
PTCHD3Q3KNS1 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
PTCHD3Q3KNS1 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC18.98■□□□□ 0.63
PTCHD3Q3KNS1 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC18.98■□□□□ 0.63
PTCHD3Q3KNS1 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTCHD3Q3KNS1 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC18.98■□□□□ 0.63
PTCHD3Q3KNS1 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTCHD3Q3KNS1 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTCHD3Q3KNS1 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTCHD3Q3KNS1 AC005332.7-201ENST00000614046 2005 ntBASIC18.98■□□□□ 0.63
PTCHD3Q3KNS1 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTCHD3Q3KNS1 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTCHD3Q3KNS1 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC18.97■□□□□ 0.63
PTCHD3Q3KNS1 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PTCHD3Q3KNS1 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PTCHD3Q3KNS1 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.97■□□□□ 0.63
PTCHD3Q3KNS1 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.97■□□□□ 0.63
PTCHD3Q3KNS1 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PTCHD3Q3KNS1 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
PTCHD3Q3KNS1 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC18.97■□□□□ 0.63
PTCHD3Q3KNS1 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
PTCHD3Q3KNS1 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PTCHD3Q3KNS1 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
PTCHD3Q3KNS1 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
PTCHD3Q3KNS1 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC18.97■□□□□ 0.63
PTCHD3Q3KNS1 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
PTCHD3Q3KNS1 YBX1P10-201ENST00000444752 975 ntBASIC18.97■□□□□ 0.63
PTCHD3Q3KNS1 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.97■□□□□ 0.63
PTCHD3Q3KNS1 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC18.97■□□□□ 0.63
PTCHD3Q3KNS1 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC18.97■□□□□ 0.63
PTCHD3Q3KNS1 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC18.97■□□□□ 0.63
PTCHD3Q3KNS1 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.97■□□□□ 0.63
PTCHD3Q3KNS1 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
PTCHD3Q3KNS1 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC18.97■□□□□ 0.63
PTCHD3Q3KNS1 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PTCHD3Q3KNS1 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PTCHD3Q3KNS1 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PTCHD3Q3KNS1 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PTCHD3Q3KNS1 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
PTCHD3Q3KNS1 Z82202.1-201ENST00000623446 1880 ntBASIC18.97■□□□□ 0.63
PTCHD3Q3KNS1 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
PTCHD3Q3KNS1 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
PTCHD3Q3KNS1 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTCHD3Q3KNS1 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTCHD3Q3KNS1 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC18.96■□□□□ 0.63
PTCHD3Q3KNS1 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTCHD3Q3KNS1 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
PTCHD3Q3KNS1 TREX2-204ENST00000370212 861 ntTSL 5 BASIC18.96■□□□□ 0.63
PTCHD3Q3KNS1 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
PTCHD3Q3KNS1 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
PTCHD3Q3KNS1 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTCHD3Q3KNS1 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC18.96■□□□□ 0.63
PTCHD3Q3KNS1 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC18.96■□□□□ 0.63
PTCHD3Q3KNS1 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC18.96■□□□□ 0.63
PTCHD3Q3KNS1 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC18.96■□□□□ 0.63
PTCHD3Q3KNS1 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC18.96■□□□□ 0.63
PTCHD3Q3KNS1 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC18.96■□□□□ 0.63
PTCHD3Q3KNS1 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC18.96■□□□□ 0.63
PTCHD3Q3KNS1 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC18.96■□□□□ 0.63
PTCHD3Q3KNS1 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTCHD3Q3KNS1 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.96■□□□□ 0.63
PTCHD3Q3KNS1 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTCHD3Q3KNS1 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
PTCHD3Q3KNS1 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.96■□□□□ 0.63
PTCHD3Q3KNS1 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC18.96■□□□□ 0.63
PTCHD3Q3KNS1 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTCHD3Q3KNS1 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTCHD3Q3KNS1 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTCHD3Q3KNS1 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PTCHD3Q3KNS1 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PTCHD3Q3KNS1 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTCHD3Q3KNS1 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTCHD3Q3KNS1 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PTCHD3Q3KNS1 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PTCHD3Q3KNS1 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTCHD3Q3KNS1 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms