Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC20.29■□□□□ 0.84
HDAC4P56524 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HDAC4P56524 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HDAC4P56524 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HDAC4P56524 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
HDAC4P56524 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
HDAC4P56524 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
HDAC4P56524 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HDAC4P56524 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
HDAC4P56524 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HDAC4P56524 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HDAC4P56524 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC20.29■□□□□ 0.84
HDAC4P56524 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HDAC4P56524 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HDAC4P56524 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
HDAC4P56524 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC20.29■□□□□ 0.84
HDAC4P56524 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HDAC4P56524 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
HDAC4P56524 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HDAC4P56524 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC20.28■□□□□ 0.84
HDAC4P56524 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HDAC4P56524 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HDAC4P56524 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC20.28■□□□□ 0.84
HDAC4P56524 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HDAC4P56524 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HDAC4P56524 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HDAC4P56524 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
HDAC4P56524 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
HDAC4P56524 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
HDAC4P56524 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC20.28■□□□□ 0.84
HDAC4P56524 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC20.28■□□□□ 0.84
HDAC4P56524 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HDAC4P56524 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HDAC4P56524 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC20.28■□□□□ 0.84
HDAC4P56524 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HDAC4P56524 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC20.28■□□□□ 0.84
HDAC4P56524 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC20.28■□□□□ 0.84
HDAC4P56524 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
HDAC4P56524 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
HDAC4P56524 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
HDAC4P56524 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HDAC4P56524 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
HDAC4P56524 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
HDAC4P56524 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HDAC4P56524 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
HDAC4P56524 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
HDAC4P56524 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC20.27■□□□□ 0.84
HDAC4P56524 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.84
HDAC4P56524 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC20.27■□□□□ 0.84
HDAC4P56524 PRORSD1P-201ENST00000295112 541 ntBASIC20.27■□□□□ 0.84
HDAC4P56524 ABHD17AP1-201ENST00000358206 933 ntBASIC20.27■□□□□ 0.84
HDAC4P56524 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
HDAC4P56524 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
HDAC4P56524 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC20.27■□□□□ 0.84
HDAC4P56524 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC20.27■□□□□ 0.84
HDAC4P56524 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC20.27■□□□□ 0.84
HDAC4P56524 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC20.27■□□□□ 0.84
HDAC4P56524 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC20.27■□□□□ 0.84
HDAC4P56524 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC20.27■□□□□ 0.84
HDAC4P56524 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
HDAC4P56524 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
HDAC4P56524 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC20.27■□□□□ 0.84
HDAC4P56524 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC20.27■□□□□ 0.84
HDAC4P56524 AC005332.7-201ENST00000614046 2005 ntBASIC20.27■□□□□ 0.84
HDAC4P56524 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HDAC4P56524 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC20.27■□□□□ 0.83
HDAC4P56524 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.83
HDAC4P56524 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC20.27■□□□□ 0.83
HDAC4P56524 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.27■□□□□ 0.83
HDAC4P56524 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HDAC4P56524 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20.26■□□□□ 0.83
HDAC4P56524 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC20.26■□□□□ 0.83
HDAC4P56524 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HDAC4P56524 KRT18P29-201ENST00000397031 1267 ntBASIC20.26■□□□□ 0.83
HDAC4P56524 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
HDAC4P56524 C1QBPP2-201ENST00000528754 825 ntBASIC20.26■□□□□ 0.83
HDAC4P56524 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC20.26■□□□□ 0.83
HDAC4P56524 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HDAC4P56524 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HDAC4P56524 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HDAC4P56524 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HDAC4P56524 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
HDAC4P56524 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HDAC4P56524 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC20.25■□□□□ 0.83
HDAC4P56524 ZNF815P-204ENST00000434898 1737 ntBASIC20.25■□□□□ 0.83
HDAC4P56524 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HDAC4P56524 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
HDAC4P56524 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HDAC4P56524 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HDAC4P56524 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC20.25■□□□□ 0.83
HDAC4P56524 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HDAC4P56524 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC20.25■□□□□ 0.83
HDAC4P56524 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
HDAC4P56524 RPPH1-201ENST00000516869 333 ntBASIC20.25■□□□□ 0.83
HDAC4P56524 IRX5-204ENST00000560154 879 ntTSL 5 BASIC20.25■□□□□ 0.83
HDAC4P56524 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
HDAC4P56524 AC004264.1-201ENST00000608354 794 ntBASIC20.25■□□□□ 0.83
HDAC4P56524 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HDAC4P56524 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HDAC4P56524 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms