Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 RER1-204ENST00000378518 522 ntTSL 3 BASIC20.79■□□□□ 0.92
VCPP55072 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC20.79■□□□□ 0.92
VCPP55072 NMU-205ENST00000511469 756 ntTSL 3 BASIC20.79■□□□□ 0.92
VCPP55072 METTL23-204ENST00000586752 904 ntTSL 2 BASIC20.79■□□□□ 0.92
VCPP55072 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC20.79■□□□□ 0.92
VCPP55072 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC20.79■□□□□ 0.92
VCPP55072 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC20.79■□□□□ 0.92
VCPP55072 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC20.79■□□□□ 0.92
VCPP55072 SRI-203ENST00000419179 1307 ntTSL 2 BASIC20.78■□□□□ 0.92
VCPP55072 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
VCPP55072 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
VCPP55072 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VCPP55072 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VCPP55072 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VCPP55072 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC20.78■□□□□ 0.92
VCPP55072 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VCPP55072 CYP2D8P-201ENST00000433633 1490 ntBASIC20.78■□□□□ 0.92
VCPP55072 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
VCPP55072 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
VCPP55072 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
VCPP55072 SLC25A3P1-201ENST00000443844 931 ntBASIC20.78■□□□□ 0.92
VCPP55072 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
VCPP55072 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC20.78■□□□□ 0.92
VCPP55072 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
VCPP55072 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC20.78■□□□□ 0.92
VCPP55072 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VCPP55072 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC20.78■□□□□ 0.92
VCPP55072 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
VCPP55072 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
VCPP55072 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VCPP55072 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VCPP55072 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
VCPP55072 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VCPP55072 H19-201ENST00000411754 1788 ntTSL 5 BASIC20.77■□□□□ 0.92
VCPP55072 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VCPP55072 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VCPP55072 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC20.77■□□□□ 0.92
VCPP55072 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VCPP55072 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VCPP55072 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
VCPP55072 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
VCPP55072 AC124283.5-201ENST00000624661 1809 ntBASIC20.77■□□□□ 0.92
VCPP55072 UNC93B2-201ENST00000285383 730 ntBASIC20.77■□□□□ 0.92
VCPP55072 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VCPP55072 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VCPP55072 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC20.77■□□□□ 0.92
VCPP55072 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC20.77■□□□□ 0.92
VCPP55072 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC20.77■□□□□ 0.92
VCPP55072 TOLLIP-AS1-201ENST00000530897 939 ntBASIC20.77■□□□□ 0.92
VCPP55072 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC20.77■□□□□ 0.92
VCPP55072 AL031963.3-201ENST00000606441 850 ntBASIC20.77■□□□□ 0.92
VCPP55072 REXO1L10P-201ENST00000615707 1290 ntBASIC20.77■□□□□ 0.92
VCPP55072 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VCPP55072 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC20.77■□□□□ 0.92
VCPP55072 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC20.77■□□□□ 0.92
VCPP55072 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
VCPP55072 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
VCPP55072 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VCPP55072 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
VCPP55072 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VCPP55072 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.77■□□□□ 0.92
VCPP55072 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
VCPP55072 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.91
VCPP55072 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
VCPP55072 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.91
VCPP55072 KRT18P22-201ENST00000402024 1347 ntBASIC20.77■□□□□ 0.91
VCPP55072 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
VCPP55072 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
VCPP55072 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
VCPP55072 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
VCPP55072 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VCPP55072 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VCPP55072 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VCPP55072 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC20.76■□□□□ 0.91
VCPP55072 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VCPP55072 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
VCPP55072 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VCPP55072 AL390955.1-201ENST00000428694 934 ntBASIC20.76■□□□□ 0.91
VCPP55072 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.76■□□□□ 0.91
VCPP55072 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC20.76■□□□□ 0.91
VCPP55072 NAPSB-206ENST00000562112 1266 ntBASIC20.76■□□□□ 0.91
VCPP55072 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC20.76■□□□□ 0.91
VCPP55072 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC20.76■□□□□ 0.91
VCPP55072 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
VCPP55072 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VCPP55072 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.76■□□□□ 0.91
VCPP55072 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC20.76■□□□□ 0.91
VCPP55072 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VCPP55072 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VCPP55072 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
VCPP55072 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC20.76■□□□□ 0.91
VCPP55072 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.76■□□□□ 0.91
VCPP55072 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VCPP55072 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
VCPP55072 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
VCPP55072 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC20.75■□□□□ 0.91
VCPP55072 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC20.75■□□□□ 0.91
VCPP55072 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC20.75■□□□□ 0.91
VCPP55072 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
VCPP55072 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC20.75■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms