Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
VCANP13611 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VCANP13611 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
VCANP13611 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC20.17■□□□□ 0.82
VCANP13611 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC20.17■□□□□ 0.82
VCANP13611 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
VCANP13611 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC20.16■□□□□ 0.82
VCANP13611 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VCANP13611 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VCANP13611 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.16■□□□□ 0.82
VCANP13611 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VCANP13611 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VCANP13611 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC20.16■□□□□ 0.82
VCANP13611 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VCANP13611 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VCANP13611 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
VCANP13611 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC20.16■□□□□ 0.82
VCANP13611 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
VCANP13611 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
VCANP13611 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VCANP13611 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC20.16■□□□□ 0.82
VCANP13611 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC20.16■□□□□ 0.82
VCANP13611 PRR29-209ENST00000582540 967 ntTSL 2 BASIC20.16■□□□□ 0.82
VCANP13611 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VCANP13611 AL773604.1-201ENST00000617417 272 ntBASIC20.16■□□□□ 0.82
VCANP13611 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
VCANP13611 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VCANP13611 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VCANP13611 DRAXINP1-201ENST00000437611 948 ntBASIC20.15■□□□□ 0.82
VCANP13611 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC20.15■□□□□ 0.82
VCANP13611 RNPS1P1-201ENST00000507437 918 ntBASIC20.15■□□□□ 0.82
VCANP13611 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC20.15■□□□□ 0.82
VCANP13611 TERC-201ENST00000602385 541 ntBASIC20.15■□□□□ 0.82
VCANP13611 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VCANP13611 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC20.15■□□□□ 0.82
VCANP13611 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
VCANP13611 AC011484.1-201ENST00000377652 1995 ntBASIC20.15■□□□□ 0.82
VCANP13611 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
VCANP13611 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
VCANP13611 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC20.15■□□□□ 0.82
VCANP13611 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC20.15■□□□□ 0.82
VCANP13611 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
VCANP13611 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VCANP13611 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
VCANP13611 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC20.15■□□□□ 0.82
VCANP13611 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VCANP13611 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
VCANP13611 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
VCANP13611 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
VCANP13611 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC20.14■□□□□ 0.82
VCANP13611 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC20.14■□□□□ 0.82
VCANP13611 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
VCANP13611 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.14■□□□□ 0.81
VCANP13611 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VCANP13611 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
VCANP13611 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
VCANP13611 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC20.14■□□□□ 0.81
VCANP13611 TOB2P1-201ENST00000469761 992 ntBASIC20.14■□□□□ 0.81
VCANP13611 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC20.14■□□□□ 0.81
VCANP13611 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC20.14■□□□□ 0.81
VCANP13611 AC064862.7-201ENST00000604520 867 ntBASIC20.14■□□□□ 0.81
VCANP13611 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
VCANP13611 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
VCANP13611 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
VCANP13611 RPSAP43-201ENST00000402237 625 ntBASIC20.14■□□□□ 0.81
VCANP13611 GPX1P2-201ENST00000429271 606 ntBASIC20.14■□□□□ 0.81
VCANP13611 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC20.14■□□□□ 0.81
VCANP13611 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
VCANP13611 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC20.14■□□□□ 0.81
VCANP13611 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VCANP13611 GOLGA6L3-201ENST00000507199 1679 ntBASIC20.14■□□□□ 0.81
VCANP13611 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.13■□□□□ 0.81
VCANP13611 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
VCANP13611 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
VCANP13611 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC20.13■□□□□ 0.81
VCANP13611 AC104819.1-201ENST00000504587 486 ntBASIC20.13■□□□□ 0.81
VCANP13611 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VCANP13611 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VCANP13611 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC20.13■□□□□ 0.81
VCANP13611 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC20.13■□□□□ 0.81
VCANP13611 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VCANP13611 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
VCANP13611 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
VCANP13611 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC20.13■□□□□ 0.81
VCANP13611 CHCHD2P8-201ENST00000429873 447 ntBASIC20.13■□□□□ 0.81
VCANP13611 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC20.13■□□□□ 0.81
VCANP13611 AL121772.3-201ENST00000610840 674 ntBASIC20.13■□□□□ 0.81
VCANP13611 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC20.13■□□□□ 0.81
VCANP13611 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VCANP13611 RFPL4AP1-201ENST00000530883 850 ntBASIC20.12■□□□□ 0.81
VCANP13611 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
VCANP13611 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC20.12■□□□□ 0.81
VCANP13611 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
VCANP13611 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
VCANP13611 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
VCANP13611 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.12■□□□□ 0.81
VCANP13611 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.12■□□□□ 0.81
VCANP13611 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
VCANP13611 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
VCANP13611 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms