Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 LINC01465-201ENST00000408887 1940 ntBASIC18.98■□□□□ 0.63
TNFP01375 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TNFP01375 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TNFP01375 AC096733.2-201ENST00000609937 1394 ntBASIC18.98■□□□□ 0.63
TNFP01375 HIST1H2APS4-201ENST00000362070 348 ntBASIC18.98■□□□□ 0.63
TNFP01375 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC18.98■□□□□ 0.63
TNFP01375 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
TNFP01375 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC18.98■□□□□ 0.63
TNFP01375 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
TNFP01375 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC18.98■□□□□ 0.63
TNFP01375 LIN28AP1-201ENST00000429574 405 ntBASIC18.98■□□□□ 0.63
TNFP01375 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.98■□□□□ 0.63
TNFP01375 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TNFP01375 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC18.98■□□□□ 0.63
TNFP01375 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TNFP01375 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC18.98■□□□□ 0.63
TNFP01375 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
TNFP01375 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC18.97■□□□□ 0.63
TNFP01375 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TNFP01375 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
TNFP01375 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.97■□□□□ 0.63
TNFP01375 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TNFP01375 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.97■□□□□ 0.63
TNFP01375 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TNFP01375 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.97■□□□□ 0.63
TNFP01375 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.97■□□□□ 0.63
TNFP01375 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TNFP01375 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
TNFP01375 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC18.97■□□□□ 0.63
TNFP01375 ECEL1P2-202ENST00000465689 757 ntBASIC18.97■□□□□ 0.63
TNFP01375 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC18.97■□□□□ 0.63
TNFP01375 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC18.97■□□□□ 0.63
TNFP01375 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
TNFP01375 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TNFP01375 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TNFP01375 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.97■□□□□ 0.63
TNFP01375 ANKRD18DP-204ENST00000455355 1975 ntBASIC18.97■□□□□ 0.63
TNFP01375 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TNFP01375 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TNFP01375 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
TNFP01375 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TNFP01375 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TNFP01375 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TNFP01375 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TNFP01375 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
TNFP01375 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
TNFP01375 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TNFP01375 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
TNFP01375 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
TNFP01375 CLDN5-201ENST00000403084 2357 ntBASIC18.96■□□□□ 0.63
TNFP01375 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TNFP01375 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
TNFP01375 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC18.96■□□□□ 0.63
TNFP01375 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC18.96■□□□□ 0.63
TNFP01375 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.96■□□□□ 0.63
TNFP01375 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
TNFP01375 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
TNFP01375 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
TNFP01375 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TNFP01375 TCF3P1-201ENST00000423021 1937 ntBASIC18.96■□□□□ 0.63
TNFP01375 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
TNFP01375 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TNFP01375 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC18.95■□□□□ 0.62
TNFP01375 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC18.95■□□□□ 0.62
TNFP01375 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TNFP01375 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
TNFP01375 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
TNFP01375 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.95■□□□□ 0.62
TNFP01375 TERF1P1-201ENST00000311003 1181 ntBASIC18.95■□□□□ 0.62
TNFP01375 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC18.95■□□□□ 0.62
TNFP01375 KRT18P57-201ENST00000443599 1254 ntBASIC18.95■□□□□ 0.62
TNFP01375 CCR12P-201ENST00000446203 998 ntBASIC18.95■□□□□ 0.62
TNFP01375 ATP5G1P1-201ENST00000448724 379 ntBASIC18.95■□□□□ 0.62
TNFP01375 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC18.95■□□□□ 0.62
TNFP01375 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
TNFP01375 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC18.95■□□□□ 0.62
TNFP01375 AC116562.4-202ENST00000641738 218 ntBASIC18.95■□□□□ 0.62
TNFP01375 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
TNFP01375 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC18.95■□□□□ 0.62
TNFP01375 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC18.95■□□□□ 0.62
TNFP01375 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TNFP01375 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TNFP01375 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
TNFP01375 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TNFP01375 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC18.95■□□□□ 0.62
TNFP01375 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TNFP01375 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
TNFP01375 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TNFP01375 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TNFP01375 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.94■□□□□ 0.62
TNFP01375 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC18.94■□□□□ 0.62
TNFP01375 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC18.94■□□□□ 0.62
TNFP01375 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC18.94■□□□□ 0.62
TNFP01375 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
TNFP01375 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC18.94■□□□□ 0.62
TNFP01375 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC18.94■□□□□ 0.62
TNFP01375 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC18.94■□□□□ 0.62
TNFP01375 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
TNFP01375 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
TNFP01375 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms