Protein–RNA interactions for Protein: O95628

CNOT4, CCR4-NOT transcription complex subunit 4, humanhuman

Known RBP Predictions only

Length 575 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4O95628 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CNOT4O95628 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
CNOT4O95628 AL691432.2-201ENST00000607222 2038 ntBASIC17.26■□□□□ 0.35
CNOT4O95628 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CNOT4O95628 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
CNOT4O95628 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
CNOT4O95628 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC17.26■□□□□ 0.35
CNOT4O95628 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CNOT4O95628 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CNOT4O95628 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
CNOT4O95628 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC17.25■□□□□ 0.35
CNOT4O95628 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CNOT4O95628 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
CNOT4O95628 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CNOT4O95628 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CNOT4O95628 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC17.25■□□□□ 0.35
CNOT4O95628 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CNOT4O95628 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
CNOT4O95628 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CNOT4O95628 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CNOT4O95628 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CNOT4O95628 NIFKP9-201ENST00000419265 221 ntBASIC17.25■□□□□ 0.35
CNOT4O95628 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC17.25■□□□□ 0.35
CNOT4O95628 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC17.25■□□□□ 0.35
CNOT4O95628 RPS15-203ENST00000586096 570 ntTSL 2 BASIC17.25■□□□□ 0.35
CNOT4O95628 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC17.25■□□□□ 0.35
CNOT4O95628 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
CNOT4O95628 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
CNOT4O95628 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CNOT4O95628 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CNOT4O95628 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC17.25■□□□□ 0.35
CNOT4O95628 AC099778.1-201ENST00000568593 1911 ntBASIC17.25■□□□□ 0.35
CNOT4O95628 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
CNOT4O95628 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC17.25■□□□□ 0.35
CNOT4O95628 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CNOT4O95628 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
CNOT4O95628 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
CNOT4O95628 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC17.24■□□□□ 0.35
CNOT4O95628 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CNOT4O95628 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
CNOT4O95628 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC17.24■□□□□ 0.35
CNOT4O95628 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC17.24■□□□□ 0.35
CNOT4O95628 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
CNOT4O95628 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CNOT4O95628 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC17.24■□□□□ 0.35
CNOT4O95628 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
CNOT4O95628 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC17.24■□□□□ 0.35
CNOT4O95628 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CNOT4O95628 FDX2-207ENST00000494368 584 ntTSL 4 BASIC17.24■□□□□ 0.35
CNOT4O95628 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
CNOT4O95628 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CNOT4O95628 REXO2-216ENST00000544196 452 ntTSL 3 BASIC17.24■□□□□ 0.35
CNOT4O95628 MIR4785-201ENST00000585005 73 ntBASIC17.24■□□□□ 0.35
CNOT4O95628 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CNOT4O95628 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
CNOT4O95628 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
CNOT4O95628 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
CNOT4O95628 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CNOT4O95628 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CNOT4O95628 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CNOT4O95628 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CNOT4O95628 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CNOT4O95628 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CNOT4O95628 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
CNOT4O95628 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CNOT4O95628 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CNOT4O95628 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CNOT4O95628 KRT8P8-201ENST00000434750 1448 ntBASIC17.23■□□□□ 0.35
CNOT4O95628 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CNOT4O95628 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CNOT4O95628 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
CNOT4O95628 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC17.23■□□□□ 0.35
CNOT4O95628 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CNOT4O95628 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC17.23■□□□□ 0.35
CNOT4O95628 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC17.23■□□□□ 0.35
CNOT4O95628 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC17.23■□□□□ 0.35
CNOT4O95628 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC17.23■□□□□ 0.35
CNOT4O95628 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
CNOT4O95628 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC17.23■□□□□ 0.35
CNOT4O95628 AC113410.3-201ENST00000623366 203 ntBASIC17.23■□□□□ 0.35
CNOT4O95628 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CNOT4O95628 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC17.23■□□□□ 0.35
CNOT4O95628 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CNOT4O95628 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC17.23■□□□□ 0.35
CNOT4O95628 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CNOT4O95628 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CNOT4O95628 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CNOT4O95628 USP39-204ENST00000409766 2033 ntTSL 2 BASIC17.23■□□□□ 0.35
CNOT4O95628 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CNOT4O95628 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC17.23■□□□□ 0.35
CNOT4O95628 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
CNOT4O95628 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CNOT4O95628 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CNOT4O95628 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC17.22■□□□□ 0.35
CNOT4O95628 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CNOT4O95628 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CNOT4O95628 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CNOT4O95628 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC17.22■□□□□ 0.35
CNOT4O95628 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CNOT4O95628 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms