Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
RAPGEF3O95398 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC29.24■■■□□ 2.27
RAPGEF3O95398 ILF2-202ENST00000368681 726 ntTSL 2 BASIC29.24■■■□□ 2.27
RAPGEF3O95398 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC29.24■■■□□ 2.27
RAPGEF3O95398 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC29.24■■■□□ 2.27
RAPGEF3O95398 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC29.24■■■□□ 2.27
RAPGEF3O95398 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
RAPGEF3O95398 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
RAPGEF3O95398 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC29.24■■■□□ 2.27
RAPGEF3O95398 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC29.24■■■□□ 2.27
RAPGEF3O95398 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
RAPGEF3O95398 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC29.23■■■□□ 2.27
RAPGEF3O95398 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC29.23■■■□□ 2.27
RAPGEF3O95398 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC29.23■■■□□ 2.27
RAPGEF3O95398 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
RAPGEF3O95398 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC29.23■■■□□ 2.27
RAPGEF3O95398 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC29.23■■■□□ 2.27
RAPGEF3O95398 AC233723.2-201ENST00000623798 2106 ntBASIC29.23■■■□□ 2.27
RAPGEF3O95398 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC29.23■■■□□ 2.27
RAPGEF3O95398 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC29.23■■■□□ 2.27
RAPGEF3O95398 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC29.23■■■□□ 2.27
RAPGEF3O95398 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
RAPGEF3O95398 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
RAPGEF3O95398 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
RAPGEF3O95398 MRPL3P1-201ENST00000400109 1033 ntBASIC29.23■■■□□ 2.27
RAPGEF3O95398 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC29.23■■■□□ 2.27
RAPGEF3O95398 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC29.23■■■□□ 2.27
RAPGEF3O95398 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC29.23■■■□□ 2.27
RAPGEF3O95398 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC29.23■■■□□ 2.27
RAPGEF3O95398 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC29.23■■■□□ 2.27
RAPGEF3O95398 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC29.23■■■□□ 2.27
RAPGEF3O95398 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC29.23■■■□□ 2.27
RAPGEF3O95398 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC29.23■■■□□ 2.27
RAPGEF3O95398 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC29.22■■■□□ 2.27
RAPGEF3O95398 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
RAPGEF3O95398 KRT8P11-201ENST00000409686 1436 ntBASIC29.22■■■□□ 2.27
RAPGEF3O95398 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC29.22■■■□□ 2.27
RAPGEF3O95398 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
RAPGEF3O95398 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC29.22■■■□□ 2.27
RAPGEF3O95398 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC29.22■■■□□ 2.27
RAPGEF3O95398 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC29.22■■■□□ 2.27
RAPGEF3O95398 IL11-204ENST00000590625 1028 ntTSL 2 BASIC29.22■■■□□ 2.27
RAPGEF3O95398 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC29.22■■■□□ 2.27
RAPGEF3O95398 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
RAPGEF3O95398 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC29.22■■■□□ 2.27
RAPGEF3O95398 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC29.22■■■□□ 2.27
RAPGEF3O95398 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC29.22■■■□□ 2.27
RAPGEF3O95398 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
RAPGEF3O95398 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC29.22■■■□□ 2.27
RAPGEF3O95398 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC29.22■■■□□ 2.27
RAPGEF3O95398 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC29.21■■■□□ 2.27
RAPGEF3O95398 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC29.21■■■□□ 2.27
RAPGEF3O95398 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
RAPGEF3O95398 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
RAPGEF3O95398 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC29.21■■■□□ 2.27
RAPGEF3O95398 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
RAPGEF3O95398 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
RAPGEF3O95398 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC29.21■■■□□ 2.27
RAPGEF3O95398 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC29.21■■■□□ 2.27
RAPGEF3O95398 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC29.21■■■□□ 2.27
RAPGEF3O95398 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
RAPGEF3O95398 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC29.2■■■□□ 2.27
RAPGEF3O95398 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC29.2■■■□□ 2.27
RAPGEF3O95398 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC29.2■■■□□ 2.27
RAPGEF3O95398 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC29.2■■■□□ 2.27
RAPGEF3O95398 TBC1D3P2-202ENST00000577902 1649 ntBASIC29.2■■■□□ 2.27
RAPGEF3O95398 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
RAPGEF3O95398 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC29.2■■■□□ 2.26
RAPGEF3O95398 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC29.2■■■□□ 2.26
RAPGEF3O95398 NME1-207ENST00000480143 964 ntTSL 2 BASIC29.2■■■□□ 2.26
RAPGEF3O95398 AC091304.2-201ENST00000564639 760 ntBASIC29.2■■■□□ 2.26
RAPGEF3O95398 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC29.2■■■□□ 2.26
RAPGEF3O95398 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC29.2■■■□□ 2.26
RAPGEF3O95398 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC29.2■■■□□ 2.26
RAPGEF3O95398 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC29.2■■■□□ 2.26
RAPGEF3O95398 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC29.2■■■□□ 2.26
RAPGEF3O95398 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC29.2■■■□□ 2.26
RAPGEF3O95398 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC29.2■■■□□ 2.26
RAPGEF3O95398 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC29.2■■■□□ 2.26
RAPGEF3O95398 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
RAPGEF3O95398 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC29.2■■■□□ 2.26
RAPGEF3O95398 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
RAPGEF3O95398 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC29.2■■■□□ 2.26
RAPGEF3O95398 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
RAPGEF3O95398 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
RAPGEF3O95398 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC29.19■■■□□ 2.26
RAPGEF3O95398 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
RAPGEF3O95398 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
RAPGEF3O95398 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
RAPGEF3O95398 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC29.19■■■□□ 2.26
RAPGEF3O95398 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
RAPGEF3O95398 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC29.19■■■□□ 2.26
RAPGEF3O95398 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC29.19■■■□□ 2.26
RAPGEF3O95398 KRT8P26-201ENST00000534154 1276 ntBASIC29.19■■■□□ 2.26
RAPGEF3O95398 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC29.19■■■□□ 2.26
RAPGEF3O95398 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC29.19■■■□□ 2.26
RAPGEF3O95398 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
RAPGEF3O95398 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
RAPGEF3O95398 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
RAPGEF3O95398 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC29.19■■■□□ 2.26
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms