Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SDC3O75056 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SDC3O75056 CD37-204ENST00000535669 1674 ntTSL 2 BASIC18.99■□□□□ 0.63
SDC3O75056 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SDC3O75056 DET1-207ENST00000564406 2315 ntTSL 2 BASIC18.99■□□□□ 0.63
SDC3O75056 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
SDC3O75056 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
SDC3O75056 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SDC3O75056 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC18.99■□□□□ 0.63
SDC3O75056 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC18.99■□□□□ 0.63
SDC3O75056 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SDC3O75056 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
SDC3O75056 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
SDC3O75056 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC18.99■□□□□ 0.63
SDC3O75056 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC18.99■□□□□ 0.63
SDC3O75056 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC18.99■□□□□ 0.63
SDC3O75056 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC18.99■□□□□ 0.63
SDC3O75056 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC18.99■□□□□ 0.63
SDC3O75056 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC18.99■□□□□ 0.63
SDC3O75056 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC18.99■□□□□ 0.63
SDC3O75056 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC18.99■□□□□ 0.63
SDC3O75056 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SDC3O75056 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC18.99■□□□□ 0.63
SDC3O75056 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SDC3O75056 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SDC3O75056 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC18.99■□□□□ 0.63
SDC3O75056 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC18.99■□□□□ 0.63
SDC3O75056 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
SDC3O75056 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SDC3O75056 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
SDC3O75056 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC18.98■□□□□ 0.63
SDC3O75056 AC073314.1-201ENST00000568729 2216 ntBASIC18.98■□□□□ 0.63
SDC3O75056 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SDC3O75056 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SDC3O75056 AP001271.2-201ENST00000624018 1556 ntBASIC18.98■□□□□ 0.63
SDC3O75056 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC18.98■□□□□ 0.63
SDC3O75056 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SDC3O75056 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
SDC3O75056 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
SDC3O75056 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC18.98■□□□□ 0.63
SDC3O75056 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SDC3O75056 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC18.98■□□□□ 0.63
SDC3O75056 AC007663.1-201ENST00000438948 1240 ntBASIC18.98■□□□□ 0.63
SDC3O75056 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC18.98■□□□□ 0.63
SDC3O75056 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC18.98■□□□□ 0.63
SDC3O75056 AL160286.2-201ENST00000567150 934 ntBASIC18.98■□□□□ 0.63
SDC3O75056 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
SDC3O75056 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
SDC3O75056 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC18.98■□□□□ 0.63
SDC3O75056 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SDC3O75056 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
SDC3O75056 FEM1AP1-201ENST00000431297 1995 ntBASIC18.98■□□□□ 0.63
SDC3O75056 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SDC3O75056 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
SDC3O75056 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
SDC3O75056 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
SDC3O75056 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SDC3O75056 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SDC3O75056 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC18.97■□□□□ 0.63
SDC3O75056 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SDC3O75056 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SDC3O75056 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
SDC3O75056 CD70-202ENST00000423145 881 ntTSL 2 BASIC18.97■□□□□ 0.63
SDC3O75056 SLC25A1P2-201ENST00000430693 912 ntBASIC18.97■□□□□ 0.63
SDC3O75056 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC18.97■□□□□ 0.63
SDC3O75056 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
SDC3O75056 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC18.97■□□□□ 0.63
SDC3O75056 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC18.97■□□□□ 0.63
SDC3O75056 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC18.97■□□□□ 0.63
SDC3O75056 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC18.97■□□□□ 0.63
SDC3O75056 GPX4-207ENST00000589115 812 ntTSL 2 BASIC18.97■□□□□ 0.63
SDC3O75056 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC18.97■□□□□ 0.63
SDC3O75056 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SDC3O75056 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
SDC3O75056 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SDC3O75056 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC18.97■□□□□ 0.63
SDC3O75056 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SDC3O75056 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SDC3O75056 MED25-212ENST00000618715 1467 ntTSL 5 BASIC18.97■□□□□ 0.63
SDC3O75056 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SDC3O75056 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SDC3O75056 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SDC3O75056 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SDC3O75056 COPE-203ENST00000351079 907 ntTSL 2 BASIC18.96■□□□□ 0.63
SDC3O75056 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SDC3O75056 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC18.96■□□□□ 0.63
SDC3O75056 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC18.96■□□□□ 0.63
SDC3O75056 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SDC3O75056 AC063952.2-201ENST00000498792 1227 ntBASIC18.96■□□□□ 0.63
SDC3O75056 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC18.96■□□□□ 0.63
SDC3O75056 LTBR-211ENST00000543190 785 ntTSL 3 BASIC18.96■□□□□ 0.63
SDC3O75056 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC18.96■□□□□ 0.63
SDC3O75056 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC18.96■□□□□ 0.63
SDC3O75056 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC18.96■□□□□ 0.63
SDC3O75056 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
SDC3O75056 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SDC3O75056 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SDC3O75056 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SDC3O75056 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC18.96■□□□□ 0.63
SDC3O75056 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms