Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC24.47■■□□□ 1.51
NPHP1O15259 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
NPHP1O15259 ANKRD20A18P-201ENST00000359341 492 ntBASIC24.47■■□□□ 1.51
NPHP1O15259 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
NPHP1O15259 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
NPHP1O15259 AL031133.1-201ENST00000406807 723 ntBASIC24.47■■□□□ 1.51
NPHP1O15259 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC24.47■■□□□ 1.51
NPHP1O15259 ISCU-203ENST00000431221 799 ntTSL 2 BASIC24.47■■□□□ 1.51
NPHP1O15259 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
NPHP1O15259 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC24.47■■□□□ 1.51
NPHP1O15259 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC24.47■■□□□ 1.51
NPHP1O15259 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC24.47■■□□□ 1.51
NPHP1O15259 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC24.47■■□□□ 1.51
NPHP1O15259 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
NPHP1O15259 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC24.46■■□□□ 1.51
NPHP1O15259 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC24.46■■□□□ 1.51
NPHP1O15259 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
NPHP1O15259 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC24.46■■□□□ 1.51
NPHP1O15259 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
NPHP1O15259 DERL1-203ENST00000419562 918 ntTSL 2 BASIC24.46■■□□□ 1.51
NPHP1O15259 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC24.46■■□□□ 1.51
NPHP1O15259 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC24.46■■□□□ 1.51
NPHP1O15259 CD320-202ENST00000537716 1119 ntTSL 2 BASIC24.46■■□□□ 1.51
NPHP1O15259 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC24.46■■□□□ 1.51
NPHP1O15259 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC24.46■■□□□ 1.51
NPHP1O15259 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC24.46■■□□□ 1.51
NPHP1O15259 AC141257.4-201ENST00000634557 245 ntBASIC24.46■■□□□ 1.51
NPHP1O15259 AC136944.6-201ENST00000634818 245 ntBASIC24.46■■□□□ 1.51
NPHP1O15259 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
NPHP1O15259 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
NPHP1O15259 SLC25A24-204ENST00000569674 2357 ntBASIC24.46■■□□□ 1.51
NPHP1O15259 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
NPHP1O15259 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC24.46■■□□□ 1.51
NPHP1O15259 TMEM179-206ENST00000616017 1645 ntBASIC24.46■■□□□ 1.51
NPHP1O15259 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC24.45■■□□□ 1.51
NPHP1O15259 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC24.45■■□□□ 1.51
NPHP1O15259 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
NPHP1O15259 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC24.45■■□□□ 1.5
NPHP1O15259 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC24.45■■□□□ 1.5
NPHP1O15259 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
NPHP1O15259 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
NPHP1O15259 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC24.45■■□□□ 1.5
NPHP1O15259 KRT18P56-201ENST00000507275 550 ntBASIC24.45■■□□□ 1.5
NPHP1O15259 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC24.45■■□□□ 1.5
NPHP1O15259 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC24.45■■□□□ 1.5
NPHP1O15259 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC24.45■■□□□ 1.5
NPHP1O15259 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
NPHP1O15259 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
NPHP1O15259 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC24.45■■□□□ 1.5
NPHP1O15259 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC24.44■■□□□ 1.5
NPHP1O15259 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC24.44■■□□□ 1.5
NPHP1O15259 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC24.44■■□□□ 1.5
NPHP1O15259 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC24.44■■□□□ 1.5
NPHP1O15259 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
NPHP1O15259 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC24.44■■□□□ 1.5
NPHP1O15259 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC24.44■■□□□ 1.5
NPHP1O15259 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC24.44■■□□□ 1.5
NPHP1O15259 TSPY17P-201ENST00000450329 467 ntBASIC24.44■■□□□ 1.5
NPHP1O15259 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC24.44■■□□□ 1.5
NPHP1O15259 AL512604.3-201ENST00000569583 964 ntBASIC24.44■■□□□ 1.5
NPHP1O15259 AC140113.3-201ENST00000605663 199 ntBASIC24.44■■□□□ 1.5
NPHP1O15259 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC24.44■■□□□ 1.5
NPHP1O15259 AP000550.4-202ENST00000639755 178 ntBASIC24.44■■□□□ 1.5
NPHP1O15259 MYC-208ENST00000641036 567 ntBASIC24.44■■□□□ 1.5
NPHP1O15259 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC24.44■■□□□ 1.5
NPHP1O15259 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC24.44■■□□□ 1.5
NPHP1O15259 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC24.44■■□□□ 1.5
NPHP1O15259 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
NPHP1O15259 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC24.44■■□□□ 1.5
NPHP1O15259 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC24.44■■□□□ 1.5
NPHP1O15259 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
NPHP1O15259 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
NPHP1O15259 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
NPHP1O15259 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
NPHP1O15259 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC24.43■■□□□ 1.5
NPHP1O15259 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC24.43■■□□□ 1.5
NPHP1O15259 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC24.43■■□□□ 1.5
NPHP1O15259 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC24.43■■□□□ 1.5
NPHP1O15259 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC24.43■■□□□ 1.5
NPHP1O15259 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC24.43■■□□□ 1.5
NPHP1O15259 KRT8P8-201ENST00000434750 1448 ntBASIC24.43■■□□□ 1.5
NPHP1O15259 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC24.43■■□□□ 1.5
NPHP1O15259 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC24.42■■□□□ 1.5
NPHP1O15259 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
NPHP1O15259 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
NPHP1O15259 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
NPHP1O15259 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC24.42■■□□□ 1.5
NPHP1O15259 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
NPHP1O15259 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC24.42■■□□□ 1.5
NPHP1O15259 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC24.42■■□□□ 1.5
NPHP1O15259 AC011558.1-201ENST00000623459 338 ntBASIC24.42■■□□□ 1.5
NPHP1O15259 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
NPHP1O15259 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
NPHP1O15259 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
NPHP1O15259 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
NPHP1O15259 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC24.42■■□□□ 1.5
NPHP1O15259 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
NPHP1O15259 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC24.42■■□□□ 1.5
NPHP1O15259 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
NPHP1O15259 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms