Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
HMGN4O00479 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
HMGN4O00479 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HMGN4O00479 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.08■□□□□ 0.48
HMGN4O00479 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.08■□□□□ 0.48
HMGN4O00479 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC18.08■□□□□ 0.48
HMGN4O00479 ANKRD18DP-204ENST00000455355 1975 ntBASIC18.08■□□□□ 0.48
HMGN4O00479 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC18.07■□□□□ 0.48
HMGN4O00479 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGN4O00479 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGN4O00479 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.07■□□□□ 0.48
HMGN4O00479 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.07■□□□□ 0.48
HMGN4O00479 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGN4O00479 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HMGN4O00479 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGN4O00479 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
HMGN4O00479 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGN4O00479 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGN4O00479 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGN4O00479 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
HMGN4O00479 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGN4O00479 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
HMGN4O00479 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC18.07■□□□□ 0.48
HMGN4O00479 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HMGN4O00479 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.07■□□□□ 0.48
HMGN4O00479 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC18.07■□□□□ 0.48
HMGN4O00479 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC18.07■□□□□ 0.48
HMGN4O00479 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC18.07■□□□□ 0.48
HMGN4O00479 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.07■□□□□ 0.48
HMGN4O00479 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGN4O00479 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
HMGN4O00479 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGN4O00479 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGN4O00479 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGN4O00479 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
HMGN4O00479 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HMGN4O00479 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGN4O00479 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
HMGN4O00479 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HMGN4O00479 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC18.07■□□□□ 0.48
HMGN4O00479 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGN4O00479 SDHAP1-207ENST00000440850 2000 ntBASIC18.06■□□□□ 0.48
HMGN4O00479 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGN4O00479 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HMGN4O00479 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HMGN4O00479 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC18.06■□□□□ 0.48
HMGN4O00479 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
HMGN4O00479 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGN4O00479 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGN4O00479 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGN4O00479 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC18.06■□□□□ 0.48
HMGN4O00479 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGN4O00479 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC18.06■□□□□ 0.48
HMGN4O00479 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
HMGN4O00479 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC18.06■□□□□ 0.48
HMGN4O00479 KRT18P16-201ENST00000510337 1294 ntBASIC18.06■□□□□ 0.48
HMGN4O00479 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC18.06■□□□□ 0.48
HMGN4O00479 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.06■□□□□ 0.48
HMGN4O00479 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.06■□□□□ 0.48
HMGN4O00479 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC18.06■□□□□ 0.48
HMGN4O00479 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGN4O00479 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGN4O00479 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGN4O00479 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGN4O00479 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.06■□□□□ 0.48
HMGN4O00479 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HMGN4O00479 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HMGN4O00479 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.06■□□□□ 0.48
HMGN4O00479 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.06■□□□□ 0.48
HMGN4O00479 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HMGN4O00479 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HMGN4O00479 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
HMGN4O00479 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HMGN4O00479 AL049812.1-201ENST00000432563 2267 ntBASIC18.05■□□□□ 0.48
HMGN4O00479 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
HMGN4O00479 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC18.05■□□□□ 0.48
HMGN4O00479 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HMGN4O00479 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.05■□□□□ 0.48
HMGN4O00479 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HMGN4O00479 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HMGN4O00479 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
HMGN4O00479 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.05■□□□□ 0.48
HMGN4O00479 RGMA-211ENST00000557420 989 ntTSL 3 BASIC18.05■□□□□ 0.48
HMGN4O00479 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC18.05■□□□□ 0.48
HMGN4O00479 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
HMGN4O00479 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
HMGN4O00479 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HMGN4O00479 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
HMGN4O00479 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.05■□□□□ 0.48
HMGN4O00479 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC18.05■□□□□ 0.48
HMGN4O00479 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC18.05■□□□□ 0.48
HMGN4O00479 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
HMGN4O00479 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.04■□□□□ 0.48
HMGN4O00479 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.04■□□□□ 0.48
HMGN4O00479 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGN4O00479 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGN4O00479 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
HMGN4O00479 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC18.04■□□□□ 0.48
HMGN4O00479 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGN4O00479 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms